openmx:proteins-proteins-openmx.git
2013-05-18 Joshua Nathaniel... Reorg for Hessian irt
2013-05-18 Joshua Nathaniel... Prep for Hessian
2013-05-18 Joshua Nathaniel... Drop support for out-of-bound parameters
2013-05-18 Joshua Nathaniel... Allow specification of the starting parameters for...
2013-05-17 Joshua Nathaniel... Analytic Hessian
2013-05-17 Joshua Nathaniel... Compute gradients with disableOptimizer [DO NOT UPSTREAM]
2013-05-17 Joshua Nathaniel... Fix for disableOptimizer
2013-05-17 Joshua Nathaniel... Remove support for custom RPF written in R
2013-05-17 Joshua Nathaniel... Document problem with GlobalRLock
2013-05-17 Joshua Nathaniel... Handle rename
2013-05-17 Joshua Nathaniel... Snapshot
2013-05-17 Joshua Nathaniel... Snapshot
2013-05-17 Joshua Nathaniel... Snapshot
2013-05-17 Joshua Nathaniel... Two-tier unbiased
2013-05-17 Joshua Nathaniel... Not working -- attempt 1
2013-05-17 Joshua Nathaniel... snapshot with irt-2d working
2013-05-17 Joshua Nathaniel... Remove ghquad
2013-05-17 Joshua Nathaniel... snapshot
2013-05-17 Joshua Nathaniel... Combine fit & gradient calculation
2013-05-17 Joshua Nathaniel... Update for 2013
2013-05-17 Joshua Nathaniel... Fixup
2013-05-17 Joshua Nathaniel... Add bias studies
2013-05-17 Joshua Nathaniel... Add checks for invalid priors & gradients
2013-05-17 Joshua Nathaniel... Up accuracy threshold
2013-05-17 Joshua Nathaniel... Add debug code
2013-05-17 Joshua Nathaniel... Adjust interpretation of design matrix
2013-05-17 Joshua Nathaniel... Doc some heuristics about EAP quadrature
2013-05-17 Joshua Nathaniel... Use R_GetCCallable to access libirt-rpf
2013-05-17 Joshua Nathaniel... Update for new librpf API
2013-05-17 Joshua Nathaniel... Enable analytic gradients
2013-05-17 Joshua Nathaniel... mdim gradient working, all tests pass
2013-05-17 Joshua Nathaniel... Trade some memory for performance
2013-05-17 Joshua Nathaniel... snapshot
2013-05-17 Joshua Nathaniel... EAP reorg
2013-05-17 Joshua Nathaniel... Adjust tests after adding prior for mdim_drm
2013-05-17 Joshua Nathaniel... Basic EAP working, regression tests checked & updated
2013-05-17 Joshua Nathaniel... snapshot
2013-05-17 Joshua Nathaniel... Gradients
2013-05-17 Joshua Nathaniel... rowMap2
2013-05-17 Joshua Nathaniel... rowMap
2013-05-17 Joshua Nathaniel... fastGHQuad
2013-05-17 Joshua Nathaniel... Add cache and G-H options
2013-05-17 Joshua Nathaniel... Add omxIntDataElementUnsafe
2013-05-17 Joshua Nathaniel... step 3
2013-05-17 Joshua Nathaniel... step 2
2013-05-17 Joshua Nathaniel... step 1
2013-05-17 Joshua Nathaniel... Cai 2010 two-tier
2013-05-17 Joshua Nathaniel... 2D and missing responses working
2013-05-17 Joshua Nathaniel... Snapshot
2013-05-16 Joshua Nathaniel... Implement proof-of-concept E-M optimization path
2013-05-16 Joshua Nathaniel... Add dlnorm algebra function
2013-05-16 Joshua Nathaniel... Short circuit copy in omxExportMatrix if possible
2013-05-10 jpritikinFail better when assigning to model$objective proposed
2013-05-06 mhunterFixed data sorting problem in state space models with...
2013-05-02 jpritikinDocument buildbot configuration
2013-05-01 jpritikinQuiet annoying PPML warning
2013-04-26 mhunterModifications to passing models and PPML to eliminate...
2013-04-26 mhunterMaking progressing implementing LISREL paths, i.e....
2013-04-24 mhunterThis should fix the state space example error. I repli...
2013-04-24 mhunterChanged state space example to use TRUE/FALSE etc inste...
2013-04-24 mhunterMade a note to users in the bivariate saturated files...
2013-04-21 jpritikinImprove omxData API
2013-04-19 jpritikinSimplify layout of omxData
2013-04-19 jpritikinRemove unused fields from omxData
2013-04-19 jpritikinSimplify omxData API
2013-04-19 jpritikinAllocate omxData with Calloc
2013-04-19 jpritikinSimplify management of omxData.type
2013-04-19 mhunterMissed one of the errors in bivariate saturated models...
2013-04-19 mhunter(Hopefully) fixed the error with the numerous bivariate...
2013-04-17 jpritikinPrep for C++ (part 2)
2013-04-17 jpritikinPrep for C++ compilation
2013-04-17 jpritikinAdd userdata argument for sort helper (like qsort_r)
2013-04-16 jpritikinExpectations only need 1 name
2013-04-16 mnealeFixed maximum number of dimensions bug so that only...
2013-04-13 jpritikinAdd API for internal expectations; remove redundent...
2013-04-13 jpritikinOMX_STATIC_ARRAY_SIZE
2013-04-13 jpritikinRemove omxInitEmptyExpectation; switch to C allocator
2013-04-13 jpritikinC-side support for submodels
2013-04-13 jpritikinAdd OMXZERO macro
2013-04-12 jpritikinMove failing tests to failing directory
2013-04-12 jpritikinAdd deps on MASS and mvtnorm
2013-04-05 jpritikinRemove lots of UNPROTECTs
2013-04-05 jpritikinRefactor allocation of omxAlgebra.args
2013-04-05 jpritikinFinal returns ought to support matrices (?)
2013-04-05 jpritikinAvoid initial useless fit computation
2013-04-05 jpritikinRefrain from duplicating the model unless required...
2013-04-05 jpritikinStore the associated R SEXP in omxMatrix instead of...
2013-04-05 jpritikinDeadcode removal
2013-04-05 jpritikinAutomatically balance PROTECT/UNPROTECT
2013-04-05 jpritikinReorder initialization so free parameters are available...
2013-04-05 jpritikinInitialize freeVarList and numFreeParam together
2013-04-05 jpritikinRename omxNewMatrixFromMxIndex to omxMatrixLookupFromState1
2013-04-05 jpritikinRename omxNewDataFromMxDataPtr to omxDataLookupFromState
2013-04-04 jpritikinMxBaseExpectation submodels and container needs to...
2013-04-04 jpritikinAdd missing mvtnorm dependency
2013-03-30 jpritikinRename omxNewMatrixFromIndexSlot to omxNewMatrixFromSlot
2013-03-30 jpritikinRemove deadcode
2013-03-30 jpritikinTeach MxExpectation to store its relationship in the...
2013-03-30 jpritikinRemove @info from MxBaseExpectation (it moved to MxBase...
2013-03-30 jpritikinNote license terms on code copied from R
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