Joshua Nathaniel Pritikin [Tue, 23 Sep 2014 13:51:54 +0000 (09:51 -0400)]
Partition into 4 datasets
Joshua Nathaniel Pritikin [Wed, 17 Sep 2014 20:25:59 +0000 (16:25 -0400)]
Finds the MLE
Joshua Nathaniel Pritikin [Mon, 8 Sep 2014 17:47:20 +0000 (13:47 -0400)]
Dev
tbates [Mon, 22 Sep 2014 22:33:48 +0000 (22:33 +0000)]
minor clarifications and layout in Rd file for multigroup fitfunction
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jpritikin [Sat, 20 Sep 2014 18:01:07 +0000 (18:01 +0000)]
Update changes
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rkirkpatrick [Fri, 19 Sep 2014 20:38:27 +0000 (20:38 +0000)]
Return SEs as "not requested" strings when argument SE=FALSE in mxStandardizeRAMpaths().
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jpritikin [Fri, 19 Sep 2014 17:02:26 +0000 (17:02 +0000)]
Cope with observed data matrix with no NAs
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jpritikin [Fri, 19 Sep 2014 14:52:34 +0000 (14:52 +0000)]
Mention fomulation of IFA independence model
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jpritikin [Fri, 19 Sep 2014 14:52:33 +0000 (14:52 +0000)]
Ignore rm error in doc build
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jpritikin [Fri, 19 Sep 2014 14:52:33 +0000 (14:52 +0000)]
Drop support for non-double matrices
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mhunter [Fri, 19 Sep 2014 14:35:20 +0000 (14:35 +0000)]
Re-alias omxSaturatedModel man page
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mhunter [Fri, 19 Sep 2014 04:07:03 +0000 (04:07 +0000)]
Add saturated model documentation. Add to and modify summary.
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mzahery [Fri, 19 Sep 2014 02:53:25 +0000 (02:53 +0000)]
CSOLNP: memory issue and reporting starting values as optimal parameters addressed
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mhunter [Fri, 19 Sep 2014 02:20:11 +0000 (02:20 +0000)]
Add constraint for saturated ordinal models with binary variables
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jpritikin [Wed, 17 Sep 2014 20:28:08 +0000 (20:28 +0000)]
Remove deadcode from 2009
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jpritikin [Mon, 15 Sep 2014 15:42:10 +0000 (15:42 +0000)]
(Re?)enable parallel processing for confidence intervals
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jpritikin [Sat, 13 Sep 2014 17:50:28 +0000 (17:50 +0000)]
Grab Eigen from RcppEigen
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mhunter [Fri, 12 Sep 2014 19:46:29 +0000 (19:46 +0000)]
Add ordinal ML/WLS test with both model identifications
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jpritikin [Fri, 12 Sep 2014 16:19:37 +0000 (16:19 +0000)]
For saturated type=cov model, set TLI=1 and RMSEA=0
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jpritikin [Thu, 11 Sep 2014 19:00:57 +0000 (19:00 +0000)]
Add internal API omxNewInternalFitFunction
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jpritikin [Thu, 11 Sep 2014 15:38:33 +0000 (15:38 +0000)]
Add omxChangeFitType
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jpritikin [Wed, 10 Sep 2014 14:00:26 +0000 (14:00 +0000)]
Recompute thresholds (when provided)
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mhunter [Tue, 9 Sep 2014 22:25:53 +0000 (22:25 +0000)]
Modified debugging in WLS
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jpritikin [Mon, 8 Sep 2014 23:08:17 +0000 (23:08 +0000)]
Rewrite algebra/fitfunction lookup in MxFitFunctionMultigroup
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jpritikin [Mon, 8 Sep 2014 23:08:15 +0000 (23:08 +0000)]
Restore commented part of test
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rkirkpatrick [Sat, 6 Sep 2014 19:13:13 +0000 (19:13 +0000)]
Changed mxTryHard()'s "objective function" references to "fit function", since that's what they're called in 2.0; add condition to use best fit if most recent fit ended in error.
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jpritikin [Fri, 5 Sep 2014 18:35:43 +0000 (18:35 +0000)]
Downgrade check of algebra dimnames to a warning for backward compat
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rkirkpatrick [Fri, 5 Sep 2014 16:33:57 +0000 (16:33 +0000)]
Edit 'make clean' to also remove src/*.dll (Windows shared library).
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rkirkpatrick [Fri, 5 Sep 2014 16:31:54 +0000 (16:31 +0000)]
Add mxTryHard() and its man page.
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jpritikin [Fri, 5 Sep 2014 16:30:24 +0000 (16:30 +0000)]
Add check for data type of algebra dimnames
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mzahery [Fri, 5 Sep 2014 14:39:17 +0000 (14:39 +0000)]
CSOLNP: removed in addition warning message
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jpritikin [Fri, 5 Sep 2014 14:21:59 +0000 (14:21 +0000)]
Deadcode
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jpritikin [Fri, 5 Sep 2014 14:19:49 +0000 (14:19 +0000)]
Restore the ability to compile without NLOPT
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mzahery [Fri, 5 Sep 2014 14:05:15 +0000 (14:05 +0000)]
NLOPT: Updated
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tbrick [Fri, 5 Sep 2014 13:53:28 +0000 (13:53 +0000)]
Implemented smarter tab-completion for MxObjects.
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jpritikin [Thu, 4 Sep 2014 20:19:17 +0000 (20:19 +0000)]
Make the global freeGroup vector private
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jpritikin [Thu, 4 Sep 2014 13:49:38 +0000 (13:49 +0000)]
Update SE study for relative tolerance
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jpritikin [Thu, 4 Sep 2014 13:49:38 +0000 (13:49 +0000)]
SE simulation studies
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jpritikin [Thu, 4 Sep 2014 13:49:34 +0000 (13:49 +0000)]
Need to import parallel per cran rules
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mneale [Wed, 3 Sep 2014 19:07:38 +0000 (19:07 +0000)]
Edited threshnames error message
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jpritikin [Wed, 3 Sep 2014 13:43:58 +0000 (13:43 +0000)]
Depend on package parallel (in R core since 2.14)
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jpritikin [Wed, 3 Sep 2014 13:43:57 +0000 (13:43 +0000)]
Revert "Avoid SEGV if an ordinal column does not have a threshold matrix"
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jpritikin [Wed, 3 Sep 2014 13:43:55 +0000 (13:43 +0000)]
Check threshnames for duplicates
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jpritikin [Tue, 2 Sep 2014 20:12:54 +0000 (20:12 +0000)]
Avoid SEGV if an ordinal column does not have a threshold matrix
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jpritikin [Tue, 2 Sep 2014 20:12:52 +0000 (20:12 +0000)]
Store omxThresholdColumn in a std::vector
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jpritikin [Tue, 2 Sep 2014 20:12:48 +0000 (20:12 +0000)]
Fix indent (whitespace only)
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jpritikin [Fri, 29 Aug 2014 14:41:38 +0000 (14:41 +0000)]
Add more build ignores
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jpritikin [Fri, 29 Aug 2014 14:26:14 +0000 (14:26 +0000)]
Clean old builds before we do cran-build
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mzahery [Fri, 29 Aug 2014 14:11:09 +0000 (14:11 +0000)]
LAD--CheckCode6.R moved to models/passing
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mzahery [Fri, 29 Aug 2014 07:52:45 +0000 (07:52 +0000)]
CSOLNP: status code report corrected
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jpritikin [Thu, 28 Aug 2014 14:14:34 +0000 (14:14 +0000)]
Change the 'running xxxmodel' output from mxRun to a message
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mhunter [Wed, 27 Aug 2014 17:17:02 +0000 (17:17 +0000)]
Toggle silent= back to FALSE as preference for running Reference/Saturated models.
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mhunter [Wed, 27 Aug 2014 17:03:32 +0000 (17:03 +0000)]
Add multilevel model example in state space form. Data is grabbed from the web.
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mhunter [Wed, 27 Aug 2014 15:57:34 +0000 (15:57 +0000)]
Add Bollen data from sem package to OpenMx.
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jpritikin [Mon, 25 Aug 2014 21:01:58 +0000 (21:01 +0000)]
Report optimizer in summary for default compute plan
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jpritikin [Mon, 25 Aug 2014 21:01:56 +0000 (21:01 +0000)]
Rename nullModels -> refModels per dev discussion
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rkirkpatrick [Fri, 22 Aug 2014 17:32:34 +0000 (17:32 +0000)]
Add column of raw SEs to output of mxStandardizeRAMpaths(); edit its test model and man page appropriately.
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mhunter [Wed, 20 Aug 2014 21:28:38 +0000 (21:28 +0000)]
Fix 'unknown macro '\t'' warning I was getting from mxRestore man page
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tbates [Wed, 20 Aug 2014 19:31:34 +0000 (19:31 +0000)]
order tables, add Threads, reword for clarity
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mhunter [Wed, 20 Aug 2014 19:13:30 +0000 (19:13 +0000)]
Document Number of Threads option.
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mhunter [Wed, 20 Aug 2014 19:00:54 +0000 (19:00 +0000)]
Modify .svnignore files. WLS branch and trunk changes. Added continuous only wls test. Found and added state space algebra test.
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mhunter [Tue, 19 Aug 2014 21:14:27 +0000 (21:14 +0000)]
Include numObs in data for mxNullModels
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mhunter [Tue, 19 Aug 2014 02:11:40 +0000 (02:11 +0000)]
First draft of mxDataWLS
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mzahery [Mon, 18 Aug 2014 22:03:09 +0000 (22:03 +0000)]
CSOLNP: some bugs are solved
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mneale [Mon, 18 Aug 2014 20:39:09 +0000 (20:39 +0000)]
Fixed documentation for reading checkpoint file via read.table
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jpritikin [Mon, 18 Aug 2014 11:25:29 +0000 (11:25 +0000)]
Run roxygen prior to building docs
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jpritikin [Mon, 18 Aug 2014 11:24:03 +0000 (11:24 +0000)]
Permit BA81 mean & variance specified with algebras
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jpritikin [Mon, 18 Aug 2014 11:23:56 +0000 (11:23 +0000)]
Rename omxSaturatedModel to mxNullModels per dev discussion
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jpritikin [Mon, 18 Aug 2014 11:23:42 +0000 (11:23 +0000)]
Fixup doc build
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jpritikin [Mon, 18 Aug 2014 11:23:34 +0000 (11:23 +0000)]
Incorporate doc feedback from Tim Brick
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jpritikin [Mon, 18 Aug 2014 11:23:26 +0000 (11:23 +0000)]
Check whether we recover the parameters
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jpritikin [Mon, 18 Aug 2014 11:23:18 +0000 (11:23 +0000)]
Improve error messages
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jpritikin [Sat, 16 Aug 2014 05:09:11 +0000 (05:09 +0000)]
Remove deadcode
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jpritikin [Sat, 16 Aug 2014 05:09:03 +0000 (05:09 +0000)]
Refuse to clear model slots by assignment to NULL and say why
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jpritikin [Sat, 16 Aug 2014 05:08:54 +0000 (05:08 +0000)]
Remove minItemsPerScore option
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jpritikin [Sat, 16 Aug 2014 05:08:43 +0000 (05:08 +0000)]
Do a slightly better job with 'make clean'
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mhunter [Fri, 15 Aug 2014 15:10:55 +0000 (15:10 +0000)]
Fix state space in FIML joint.
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jpritikin [Fri, 15 Aug 2014 13:40:17 +0000 (13:40 +0000)]
Switch default optimizer back to CSOLNP
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mhunter [Mon, 11 Aug 2014 16:54:34 +0000 (16:54 +0000)]
Remove some commented out code from Summary.
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mhunter [Mon, 11 Aug 2014 16:52:37 +0000 (16:52 +0000)]
Made MxSummary have prettier printing of Chi-Square and RMSEA with CI. Also added more checks for SummaryCheck.R
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jpritikin [Mon, 11 Aug 2014 14:31:15 +0000 (14:31 +0000)]
Check for null infoDefinite in summary
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jpritikin [Mon, 11 Aug 2014 14:31:08 +0000 (14:31 +0000)]
Extinguish globalState
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jpritikin [Mon, 11 Aug 2014 14:30:51 +0000 (14:30 +0000)]
Remove cut & paste code duplication
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jpritikin [Mon, 11 Aug 2014 14:30:44 +0000 (14:30 +0000)]
Permit compilation without NLOPT
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mzahery [Mon, 11 Aug 2014 05:21:27 +0000 (05:21 +0000)]
NLOPT and Simulated annealing added
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jpritikin [Sat, 9 Aug 2014 00:30:11 +0000 (00:30 +0000)]
Report condition number when standard erorrs are enabled
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jpritikin [Fri, 8 Aug 2014 14:35:05 +0000 (14:35 +0000)]
Improve destruction order
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3742
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jpritikin [Fri, 8 Aug 2014 14:34:57 +0000 (14:34 +0000)]
Merge OMX_VERBOSE to OMX_DEBUG
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3741
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jpritikin [Fri, 8 Aug 2014 14:34:46 +0000 (14:34 +0000)]
Simplify copyParamToModel API
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3740
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jpritikin [Fri, 8 Aug 2014 14:34:35 +0000 (14:34 +0000)]
Remove deprecated naAction arg
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3739
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jpritikin [Fri, 8 Aug 2014 14:34:27 +0000 (14:34 +0000)]
Move childList from omxState to FitContext
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3738
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jpritikin [Fri, 8 Aug 2014 06:18:20 +0000 (06:18 +0000)]
Track whether a model has been run for submodels
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3737
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mhunter [Fri, 8 Aug 2014 04:31:01 +0000 (04:31 +0000)]
Removed dredded paste0 calls. They prevent otherwise backward compatible code to break.
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3736
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mhunter [Fri, 8 Aug 2014 04:24:17 +0000 (04:24 +0000)]
Modify FIML Single Iteration Joint to accomodate State Space expectations for continuous vars.
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3735
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jpritikin [Thu, 7 Aug 2014 15:43:10 +0000 (15:43 +0000)]
Distinguish between stale models and models which has not been run
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3734
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jpritikin [Thu, 7 Aug 2014 15:43:03 +0000 (15:43 +0000)]
Improve reporting of CIs for non-free parameters
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3733
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jpritikin [Thu, 7 Aug 2014 15:42:52 +0000 (15:42 +0000)]
Add more tests for fit statistics
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3732
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jpritikin [Thu, 7 Aug 2014 15:42:40 +0000 (15:42 +0000)]
Sync ba81quad
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3731
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jpritikin [Thu, 7 Aug 2014 15:42:33 +0000 (15:42 +0000)]
Remove as.IFAgroup (now in the RPF package)
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3730
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jpritikin [Thu, 7 Aug 2014 06:04:30 +0000 (06:04 +0000)]
Ignore request for CIs if the label exists and is not a free parameter
git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3729
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projects / openmx:openmx.git / log