openmx:openmx.git
3 years agoPartition into 4 datasets middle
Joshua Nathaniel Pritikin [Tue, 23 Sep 2014 13:51:54 +0000 (09:51 -0400)]
Partition into 4 datasets

3 years agoFinds the MLE
Joshua Nathaniel Pritikin [Wed, 17 Sep 2014 20:25:59 +0000 (16:25 -0400)]
Finds the MLE

3 years agoDev
Joshua Nathaniel Pritikin [Mon, 8 Sep 2014 17:47:20 +0000 (13:47 -0400)]
Dev

3 years agominor clarifications and layout in Rd file for multigroup fitfunction
tbates [Mon, 22 Sep 2014 22:33:48 +0000 (22:33 +0000)]
minor clarifications and layout in Rd file for multigroup fitfunction

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3825 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoUpdate changes
jpritikin [Sat, 20 Sep 2014 18:01:07 +0000 (18:01 +0000)]
Update changes

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3824 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReturn SEs as "not requested" strings when argument SE=FALSE in mxStandardizeRAMpaths().
rkirkpatrick [Fri, 19 Sep 2014 20:38:27 +0000 (20:38 +0000)]
Return SEs as "not requested" strings when argument SE=FALSE in mxStandardizeRAMpaths().

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3823 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCope with observed data matrix with no NAs
jpritikin [Fri, 19 Sep 2014 17:02:26 +0000 (17:02 +0000)]
Cope with observed data matrix with no NAs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3822 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMention fomulation of IFA independence model
jpritikin [Fri, 19 Sep 2014 14:52:34 +0000 (14:52 +0000)]
Mention fomulation of IFA independence model

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3821 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoIgnore rm error in doc build
jpritikin [Fri, 19 Sep 2014 14:52:33 +0000 (14:52 +0000)]
Ignore rm error in doc build

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3820 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDrop support for non-double matrices
jpritikin [Fri, 19 Sep 2014 14:52:33 +0000 (14:52 +0000)]
Drop support for non-double matrices

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3819 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRe-alias omxSaturatedModel man page
mhunter [Fri, 19 Sep 2014 14:35:20 +0000 (14:35 +0000)]
Re-alias omxSaturatedModel man page

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3818 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd saturated model documentation. Add to and modify summary.
mhunter [Fri, 19 Sep 2014 04:07:03 +0000 (04:07 +0000)]
Add saturated model documentation.  Add to and modify summary.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3817 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: memory issue and reporting starting values as optimal parameters addressed
mzahery [Fri, 19 Sep 2014 02:53:25 +0000 (02:53 +0000)]
CSOLNP: memory issue and reporting starting values as optimal parameters addressed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3816 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd constraint for saturated ordinal models with binary variables
mhunter [Fri, 19 Sep 2014 02:20:11 +0000 (02:20 +0000)]
Add constraint for saturated ordinal models with binary variables

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3815 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove deadcode from 2009
jpritikin [Wed, 17 Sep 2014 20:28:08 +0000 (20:28 +0000)]
Remove deadcode from 2009

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3814 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years ago(Re?)enable parallel processing for confidence intervals
jpritikin [Mon, 15 Sep 2014 15:42:10 +0000 (15:42 +0000)]
(Re?)enable parallel processing for confidence intervals

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3813 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoGrab Eigen from RcppEigen
jpritikin [Sat, 13 Sep 2014 17:50:28 +0000 (17:50 +0000)]
Grab Eigen from RcppEigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3812 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd ordinal ML/WLS test with both model identifications
mhunter [Fri, 12 Sep 2014 19:46:29 +0000 (19:46 +0000)]
Add ordinal ML/WLS test with both model identifications

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3811 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFor saturated type=cov model, set TLI=1 and RMSEA=0
jpritikin [Fri, 12 Sep 2014 16:19:37 +0000 (16:19 +0000)]
For saturated type=cov model, set TLI=1 and RMSEA=0

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3810 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd internal API omxNewInternalFitFunction
jpritikin [Thu, 11 Sep 2014 19:00:57 +0000 (19:00 +0000)]
Add internal API omxNewInternalFitFunction

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3809 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd omxChangeFitType
jpritikin [Thu, 11 Sep 2014 15:38:33 +0000 (15:38 +0000)]
Add omxChangeFitType

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3808 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRecompute thresholds (when provided)
jpritikin [Wed, 10 Sep 2014 14:00:26 +0000 (14:00 +0000)]
Recompute thresholds (when provided)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3807 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoModified debugging in WLS
mhunter [Tue, 9 Sep 2014 22:25:53 +0000 (22:25 +0000)]
Modified debugging in WLS

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3806 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRewrite algebra/fitfunction lookup in MxFitFunctionMultigroup
jpritikin [Mon, 8 Sep 2014 23:08:17 +0000 (23:08 +0000)]
Rewrite algebra/fitfunction lookup in MxFitFunctionMultigroup

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3805 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRestore commented part of test
jpritikin [Mon, 8 Sep 2014 23:08:15 +0000 (23:08 +0000)]
Restore commented part of test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3804 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoChanged mxTryHard()'s "objective function" references to "fit function", since that...
rkirkpatrick [Sat, 6 Sep 2014 19:13:13 +0000 (19:13 +0000)]
Changed mxTryHard()'s "objective function" references to "fit function", since that's what they're called in 2.0; add condition to use best fit if most recent fit ended in error.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3803 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDowngrade check of algebra dimnames to a warning for backward compat
jpritikin [Fri, 5 Sep 2014 18:35:43 +0000 (18:35 +0000)]
Downgrade check of algebra dimnames to a warning for backward compat

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3802 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEdit 'make clean' to also remove src/*.dll (Windows shared library).
rkirkpatrick [Fri, 5 Sep 2014 16:33:57 +0000 (16:33 +0000)]
Edit 'make clean' to also remove src/*.dll (Windows shared library).

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3801 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd mxTryHard() and its man page.
rkirkpatrick [Fri, 5 Sep 2014 16:31:54 +0000 (16:31 +0000)]
Add mxTryHard() and its man page.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3800 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd check for data type of algebra dimnames
jpritikin [Fri, 5 Sep 2014 16:30:24 +0000 (16:30 +0000)]
Add check for data type of algebra dimnames

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3799 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: removed in addition warning message
mzahery [Fri, 5 Sep 2014 14:39:17 +0000 (14:39 +0000)]
CSOLNP: removed in addition warning message

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3798 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDeadcode
jpritikin [Fri, 5 Sep 2014 14:21:59 +0000 (14:21 +0000)]
Deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3797 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRestore the ability to compile without NLOPT
jpritikin [Fri, 5 Sep 2014 14:19:49 +0000 (14:19 +0000)]
Restore the ability to compile without NLOPT

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3796 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoNLOPT: Updated
mzahery [Fri, 5 Sep 2014 14:05:15 +0000 (14:05 +0000)]
NLOPT: Updated

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3795 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImplemented smarter tab-completion for MxObjects.
tbrick [Fri, 5 Sep 2014 13:53:28 +0000 (13:53 +0000)]
Implemented smarter tab-completion for MxObjects.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3794 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMake the global freeGroup vector private
jpritikin [Thu, 4 Sep 2014 20:19:17 +0000 (20:19 +0000)]
Make the global freeGroup vector private

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3793 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoUpdate SE study for relative tolerance
jpritikin [Thu, 4 Sep 2014 13:49:38 +0000 (13:49 +0000)]
Update SE study for relative tolerance

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3792 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSE simulation studies
jpritikin [Thu, 4 Sep 2014 13:49:38 +0000 (13:49 +0000)]
SE simulation studies

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3791 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoNeed to import parallel per cran rules
jpritikin [Thu, 4 Sep 2014 13:49:34 +0000 (13:49 +0000)]
Need to import parallel per cran rules

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3790 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEdited threshnames error message
mneale [Wed, 3 Sep 2014 19:07:38 +0000 (19:07 +0000)]
Edited threshnames error message

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3789 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDepend on package parallel (in R core since 2.14)
jpritikin [Wed, 3 Sep 2014 13:43:58 +0000 (13:43 +0000)]
Depend on package parallel (in R core since 2.14)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3788 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "Avoid SEGV if an ordinal column does not have a threshold matrix"
jpritikin [Wed, 3 Sep 2014 13:43:57 +0000 (13:43 +0000)]
Revert "Avoid SEGV if an ordinal column does not have a threshold matrix"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3787 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCheck threshnames for duplicates
jpritikin [Wed, 3 Sep 2014 13:43:55 +0000 (13:43 +0000)]
Check threshnames for duplicates

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3786 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAvoid SEGV if an ordinal column does not have a threshold matrix
jpritikin [Tue, 2 Sep 2014 20:12:54 +0000 (20:12 +0000)]
Avoid SEGV if an ordinal column does not have a threshold matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3785 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoStore omxThresholdColumn in a std::vector
jpritikin [Tue, 2 Sep 2014 20:12:52 +0000 (20:12 +0000)]
Store omxThresholdColumn in a std::vector

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3784 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix indent (whitespace only)
jpritikin [Tue, 2 Sep 2014 20:12:48 +0000 (20:12 +0000)]
Fix indent (whitespace only)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3783 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd more build ignores
jpritikin [Fri, 29 Aug 2014 14:41:38 +0000 (14:41 +0000)]
Add more build ignores

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3782 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoClean old builds before we do cran-build
jpritikin [Fri, 29 Aug 2014 14:26:14 +0000 (14:26 +0000)]
Clean old builds before we do cran-build

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3781 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoLAD--CheckCode6.R moved to models/passing
mzahery [Fri, 29 Aug 2014 14:11:09 +0000 (14:11 +0000)]
LAD--CheckCode6.R moved to models/passing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3780 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: status code report corrected
mzahery [Fri, 29 Aug 2014 07:52:45 +0000 (07:52 +0000)]
CSOLNP: status code report corrected

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3779 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoChange the 'running xxxmodel' output from mxRun to a message
jpritikin [Thu, 28 Aug 2014 14:14:34 +0000 (14:14 +0000)]
Change the 'running xxxmodel' output from mxRun to a message

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3778 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoToggle silent= back to FALSE as preference for running Reference/Saturated models.
mhunter [Wed, 27 Aug 2014 17:17:02 +0000 (17:17 +0000)]
Toggle silent= back to FALSE as preference for running Reference/Saturated models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3777 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd multilevel model example in state space form. Data is grabbed from the web.
mhunter [Wed, 27 Aug 2014 17:03:32 +0000 (17:03 +0000)]
Add multilevel model example in state space form.  Data is grabbed from the web.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3776 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd Bollen data from sem package to OpenMx.
mhunter [Wed, 27 Aug 2014 15:57:34 +0000 (15:57 +0000)]
Add Bollen data from sem package to OpenMx.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3775 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReport optimizer in summary for default compute plan
jpritikin [Mon, 25 Aug 2014 21:01:58 +0000 (21:01 +0000)]
Report optimizer in summary for default compute plan

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3774 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRename nullModels -> refModels per dev discussion
jpritikin [Mon, 25 Aug 2014 21:01:56 +0000 (21:01 +0000)]
Rename nullModels -> refModels per dev discussion

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3773 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd column of raw SEs to output of mxStandardizeRAMpaths(); edit its test model and...
rkirkpatrick [Fri, 22 Aug 2014 17:32:34 +0000 (17:32 +0000)]
Add column of raw SEs to output of mxStandardizeRAMpaths(); edit its test model and man page appropriately.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3772 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix 'unknown macro '\t'' warning I was getting from mxRestore man page
mhunter [Wed, 20 Aug 2014 21:28:38 +0000 (21:28 +0000)]
Fix 'unknown macro '\t'' warning I was getting from mxRestore man page

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3771 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoorder tables, add Threads, reword for clarity
tbates [Wed, 20 Aug 2014 19:31:34 +0000 (19:31 +0000)]
order tables, add Threads, reword for clarity

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3770 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDocument Number of Threads option.
mhunter [Wed, 20 Aug 2014 19:13:30 +0000 (19:13 +0000)]
Document Number of Threads option.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3769 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoModify .svnignore files. WLS branch and trunk changes. Added continuous only wls...
mhunter [Wed, 20 Aug 2014 19:00:54 +0000 (19:00 +0000)]
Modify .svnignore files.  WLS branch and trunk changes.  Added continuous only wls test.  Found and added state space algebra test.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3768 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoInclude numObs in data for mxNullModels
mhunter [Tue, 19 Aug 2014 21:14:27 +0000 (21:14 +0000)]
Include numObs in data for mxNullModels

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3767 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFirst draft of mxDataWLS
mhunter [Tue, 19 Aug 2014 02:11:40 +0000 (02:11 +0000)]
First draft of mxDataWLS

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3766 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: some bugs are solved
mzahery [Mon, 18 Aug 2014 22:03:09 +0000 (22:03 +0000)]
CSOLNP: some bugs are solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3765 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFixed documentation for reading checkpoint file via read.table
mneale [Mon, 18 Aug 2014 20:39:09 +0000 (20:39 +0000)]
Fixed documentation for reading checkpoint file via read.table

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3764 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRun roxygen prior to building docs
jpritikin [Mon, 18 Aug 2014 11:25:29 +0000 (11:25 +0000)]
Run roxygen prior to building docs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3763 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPermit BA81 mean & variance specified with algebras
jpritikin [Mon, 18 Aug 2014 11:24:03 +0000 (11:24 +0000)]
Permit BA81 mean & variance specified with algebras

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3762 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRename omxSaturatedModel to mxNullModels per dev discussion
jpritikin [Mon, 18 Aug 2014 11:23:56 +0000 (11:23 +0000)]
Rename omxSaturatedModel to mxNullModels per dev discussion

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3761 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFixup doc build
jpritikin [Mon, 18 Aug 2014 11:23:42 +0000 (11:23 +0000)]
Fixup doc build

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3760 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoIncorporate doc feedback from Tim Brick
jpritikin [Mon, 18 Aug 2014 11:23:34 +0000 (11:23 +0000)]
Incorporate doc feedback from Tim Brick

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3759 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCheck whether we recover the parameters
jpritikin [Mon, 18 Aug 2014 11:23:26 +0000 (11:23 +0000)]
Check whether we recover the parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3758 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImprove error messages
jpritikin [Mon, 18 Aug 2014 11:23:18 +0000 (11:23 +0000)]
Improve error messages

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3757 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove deadcode
jpritikin [Sat, 16 Aug 2014 05:09:11 +0000 (05:09 +0000)]
Remove deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3756 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRefuse to clear model slots by assignment to NULL and say why
jpritikin [Sat, 16 Aug 2014 05:09:03 +0000 (05:09 +0000)]
Refuse to clear model slots by assignment to NULL and say why

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3755 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove minItemsPerScore option
jpritikin [Sat, 16 Aug 2014 05:08:54 +0000 (05:08 +0000)]
Remove minItemsPerScore option

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3754 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDo a slightly better job with 'make clean'
jpritikin [Sat, 16 Aug 2014 05:08:43 +0000 (05:08 +0000)]
Do a slightly better job with 'make clean'

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3753 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix state space in FIML joint.
mhunter [Fri, 15 Aug 2014 15:10:55 +0000 (15:10 +0000)]
Fix state space in FIML joint.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3752 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSwitch default optimizer back to CSOLNP
jpritikin [Fri, 15 Aug 2014 13:40:17 +0000 (13:40 +0000)]
Switch default optimizer back to CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3751 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove some commented out code from Summary.
mhunter [Mon, 11 Aug 2014 16:54:34 +0000 (16:54 +0000)]
Remove some commented out code from Summary.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3750 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMade MxSummary have prettier printing of Chi-Square and RMSEA with CI. Also added...
mhunter [Mon, 11 Aug 2014 16:52:37 +0000 (16:52 +0000)]
Made MxSummary have prettier printing of Chi-Square and RMSEA with CI.  Also added more checks for SummaryCheck.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3749 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCheck for null infoDefinite in summary
jpritikin [Mon, 11 Aug 2014 14:31:15 +0000 (14:31 +0000)]
Check for null infoDefinite in summary

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3748 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoExtinguish globalState
jpritikin [Mon, 11 Aug 2014 14:31:08 +0000 (14:31 +0000)]
Extinguish globalState

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3747 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove cut & paste code duplication
jpritikin [Mon, 11 Aug 2014 14:30:51 +0000 (14:30 +0000)]
Remove cut & paste code duplication

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3746 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPermit compilation without NLOPT
jpritikin [Mon, 11 Aug 2014 14:30:44 +0000 (14:30 +0000)]
Permit compilation without NLOPT

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3745 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoNLOPT and Simulated annealing added
mzahery [Mon, 11 Aug 2014 05:21:27 +0000 (05:21 +0000)]
NLOPT and Simulated annealing added

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3744 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReport condition number when standard erorrs are enabled
jpritikin [Sat, 9 Aug 2014 00:30:11 +0000 (00:30 +0000)]
Report condition number when standard erorrs are enabled

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3743 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImprove destruction order
jpritikin [Fri, 8 Aug 2014 14:35:05 +0000 (14:35 +0000)]
Improve destruction order

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3742 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMerge OMX_VERBOSE to OMX_DEBUG
jpritikin [Fri, 8 Aug 2014 14:34:57 +0000 (14:34 +0000)]
Merge OMX_VERBOSE to OMX_DEBUG

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3741 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSimplify copyParamToModel API
jpritikin [Fri, 8 Aug 2014 14:34:46 +0000 (14:34 +0000)]
Simplify copyParamToModel API

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3740 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove deprecated naAction arg
jpritikin [Fri, 8 Aug 2014 14:34:35 +0000 (14:34 +0000)]
Remove deprecated naAction arg

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3739 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMove childList from omxState to FitContext
jpritikin [Fri, 8 Aug 2014 14:34:27 +0000 (14:34 +0000)]
Move childList from omxState to FitContext

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3738 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTrack whether a model has been run for submodels
jpritikin [Fri, 8 Aug 2014 06:18:20 +0000 (06:18 +0000)]
Track whether a model has been run for submodels

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3737 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemoved dredded paste0 calls. They prevent otherwise backward compatible code to...
mhunter [Fri, 8 Aug 2014 04:31:01 +0000 (04:31 +0000)]
Removed dredded paste0 calls.  They prevent otherwise backward compatible code to break.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3736 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoModify FIML Single Iteration Joint to accomodate State Space expectations for continu...
mhunter [Fri, 8 Aug 2014 04:24:17 +0000 (04:24 +0000)]
Modify FIML Single Iteration Joint to accomodate State Space expectations for continuous vars.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3735 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDistinguish between stale models and models which has not been run
jpritikin [Thu, 7 Aug 2014 15:43:10 +0000 (15:43 +0000)]
Distinguish between stale models and models which has not been run

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3734 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImprove reporting of CIs for non-free parameters
jpritikin [Thu, 7 Aug 2014 15:43:03 +0000 (15:43 +0000)]
Improve reporting of CIs for non-free parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3733 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd more tests for fit statistics
jpritikin [Thu, 7 Aug 2014 15:42:52 +0000 (15:42 +0000)]
Add more tests for fit statistics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3732 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSync ba81quad
jpritikin [Thu, 7 Aug 2014 15:42:40 +0000 (15:42 +0000)]
Sync ba81quad

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3731 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove as.IFAgroup (now in the RPF package)
jpritikin [Thu, 7 Aug 2014 15:42:33 +0000 (15:42 +0000)]
Remove as.IFAgroup (now in the RPF package)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3730 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoIgnore request for CIs if the label exists and is not a free parameter
jpritikin [Thu, 7 Aug 2014 06:04:30 +0000 (06:04 +0000)]
Ignore request for CIs if the label exists and is not a free parameter

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3729 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1