openmx:openmx.git
4 years agoNewton-Raphson doesn't need fit; don't compute it ifa
Joshua Nathaniel Pritikin [Mon, 15 Jul 2013 11:30:34 +0000 (17:00 +0530)]
Newton-Raphson doesn't need fit; don't compute it

4 years agoGradients for the latent distribution
Joshua Nathaniel Pritikin [Thu, 11 Jul 2013 02:50:11 +0000 (08:20 +0530)]
Gradients for the latent distribution

4 years agoDisable NPSOL gradient verification by default (this is a developer feature)
Joshua Nathaniel Pritikin [Mon, 15 Jul 2013 02:39:40 +0000 (08:09 +0530)]
Disable NPSOL gradient verification by default (this is a developer feature)

4 years agoCan't protect NPSOL against reentry without proper exception handling
Joshua Nathaniel Pritikin [Mon, 15 Jul 2013 10:40:57 +0000 (16:10 +0530)]
Can't protect NPSOL against reentry without proper exception handling

4 years agoActually fixed state space sorting issue ... I think.
mhunter [Sat, 13 Jul 2013 00:11:03 +0000 (00:11 +0000)]
Actually fixed state space sorting issue ... I think.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2723 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoServe a warning if a factor was not created using mxFactor
jpritikin [Fri, 12 Jul 2013 13:57:43 +0000 (13:57 +0000)]
Serve a warning if a factor was not created using mxFactor

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2722 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix data sorting issue in state space expectations.
mhunter [Fri, 12 Jul 2013 04:48:44 +0000 (04:48 +0000)]
Fix data sorting issue in state space expectations.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2721 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPass item models in a list instead of an MxMatrix
jpritikin [Fri, 12 Jul 2013 04:05:30 +0000 (04:05 +0000)]
Pass item models in a list instead of an MxMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2720 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove EAP performance
jpritikin [Fri, 12 Jul 2013 04:05:14 +0000 (04:05 +0000)]
Improve EAP performance

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2719 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReduce rpf evaluations in two-tier models
jpritikin [Fri, 12 Jul 2013 04:05:06 +0000 (04:05 +0000)]
Reduce rpf evaluations in two-tier models

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2718 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unneeded dependencies
jpritikin [Fri, 12 Jul 2013 03:09:43 +0000 (03:09 +0000)]
Remove unneeded dependencies

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2717 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoGot turned off by mistake, re-enable
jpritikin [Thu, 11 Jul 2013 13:38:32 +0000 (13:38 +0000)]
Got turned off by mistake, re-enable

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2716 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoLook at expectation to determine which fit to calculate
jpritikin [Thu, 11 Jul 2013 04:17:40 +0000 (04:17 +0000)]
Look at expectation to determine which fit to calculate

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2715 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPermit better control over whether NPSOL uses gradients
jpritikin [Thu, 11 Jul 2013 04:17:31 +0000 (04:17 +0000)]
Permit better control over whether NPSOL uses gradients

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2714 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdjust BA81 expectation context argument
jpritikin [Thu, 11 Jul 2013 04:17:21 +0000 (04:17 +0000)]
Adjust BA81 expectation context argument

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2713 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFill in default upper & lower bounds
jpritikin [Wed, 10 Jul 2013 07:31:52 +0000 (07:31 +0000)]
Fill in default upper & lower bounds

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2712 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRework specification of free param groups per Tim's suggestion
jpritikin [Wed, 10 Jul 2013 07:31:35 +0000 (07:31 +0000)]
Rework specification of free param groups per Tim's suggestion

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2711 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoComment debug code (otherwise error status is ignored)
jpritikin [Wed, 10 Jul 2013 07:05:34 +0000 (07:05 +0000)]
Comment debug code (otherwise error status is ignored)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2710 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPut openmp compiler flags in a separate variable
jpritikin [Wed, 10 Jul 2013 07:05:20 +0000 (07:05 +0000)]
Put openmp compiler flags in a separate variable

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2709 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdding to State Space documentation. And fixing OpenMx citation.
mhunter [Tue, 9 Jul 2013 21:24:30 +0000 (21:24 +0000)]
Adding to State Space documentation.  And fixing OpenMx citation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2708 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFixes to the WLS fit function, aCov data type, and associated thresholds checking.
tbrick [Tue, 9 Jul 2013 09:44:39 +0000 (09:44 +0000)]
Fixes to the WLS fit function, aCov data type, and associated thresholds checking.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2707 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMultigroup two-tier
jpritikin [Tue, 9 Jul 2013 04:35:17 +0000 (04:35 +0000)]
Multigroup two-tier

The main bug fix here is that dnorm was expected standard deviation
instead of variance. The other code changes probably don't do anything
except give the debug option of bounds checked array indexing.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2706 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUse correct density for specific dimensions
jpritikin [Mon, 8 Jul 2013 11:26:03 +0000 (11:26 +0000)]
Use correct density for specific dimensions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2705 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport EAP scores organized in the same way as flexMIRT
jpritikin [Mon, 8 Jul 2013 11:25:55 +0000 (11:25 +0000)]
Report EAP scores organized in the same way as flexMIRT

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2704 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRespect bounds, if set, on the latent distribution
jpritikin [Mon, 8 Jul 2013 11:25:43 +0000 (11:25 +0000)]
Respect bounds, if set, on the latent distribution

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2703 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate diagnostics
jpritikin [Mon, 8 Jul 2013 11:25:35 +0000 (11:25 +0000)]
Update diagnostics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2702 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd warning for even numbers of quadrature points
jpritikin [Sun, 7 Jul 2013 09:53:02 +0000 (09:53 +0000)]
Add warning for even numbers of quadrature points

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2701 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove to nightly
jpritikin [Sun, 7 Jul 2013 09:52:53 +0000 (09:52 +0000)]
Move to nightly

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2700 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTest multigroup, multidimensional EAP
jpritikin [Sun, 7 Jul 2013 09:52:33 +0000 (09:52 +0000)]
Test multigroup, multidimensional EAP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2699 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPartially fix reporting for custom Compute plans
jpritikin [Sun, 7 Jul 2013 06:46:03 +0000 (06:46 +0000)]
Partially fix reporting for custom Compute plans

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2698 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove most instances of setFinalReturns
jpritikin [Sun, 7 Jul 2013 06:45:50 +0000 (06:45 +0000)]
Remove most instances of setFinalReturns

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2697 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd multigroup tests
jpritikin [Sun, 7 Jul 2013 06:45:32 +0000 (06:45 +0000)]
Add multigroup tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2696 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove EAP scores to expectation slot scores.out
jpritikin [Sat, 6 Jul 2013 14:39:02 +0000 (14:39 +0000)]
Move EAP scores to expectation slot scores.out

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2695 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCheck whether LL is decreasing (not enabled by default)
jpritikin [Sat, 6 Jul 2013 14:38:40 +0000 (14:38 +0000)]
Check whether LL is decreasing (not enabled by default)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2694 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCreate parameter maps for mean & covariance
jpritikin [Sat, 6 Jul 2013 14:38:33 +0000 (14:38 +0000)]
Create parameter maps for mean & covariance

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2693 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMultigroup IFA
jpritikin [Sat, 6 Jul 2013 14:38:23 +0000 (14:38 +0000)]
Multigroup IFA

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2692 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd Hessian symmetry correction in ComputeOnce path
jpritikin [Sat, 6 Jul 2013 14:38:07 +0000 (14:38 +0000)]
Add Hessian symmetry correction in ComputeOnce path

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2691 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAllow more than 1 algebra/expectation in MxComputeOnce
jpritikin [Sat, 6 Jul 2013 14:37:58 +0000 (14:37 +0000)]
Allow more than 1 algebra/expectation in MxComputeOnce

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2690 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoNewton-Raphson
jpritikin [Sat, 6 Jul 2013 14:37:48 +0000 (14:37 +0000)]
Newton-Raphson

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2689 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReplace mxComputeAssign with mxAlgebra(..., fixed=TRUE)
jpritikin [Sat, 6 Jul 2013 14:37:27 +0000 (14:37 +0000)]
Replace mxComputeAssign with mxAlgebra(..., fixed=TRUE)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2688 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoNo need to report EM.LL in a special way
jpritikin [Sat, 6 Jul 2013 14:37:10 +0000 (14:37 +0000)]
No need to report EM.LL in a special way

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2687 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix mxComputeOnce per Tim's suggestion
jpritikin [Sat, 6 Jul 2013 14:36:59 +0000 (14:36 +0000)]
Fix mxComputeOnce per Tim's suggestion

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2686 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove tests to passing
jpritikin [Sat, 6 Jul 2013 14:36:41 +0000 (14:36 +0000)]
Move tests to passing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2685 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't round quadrature points
jpritikin [Sat, 6 Jul 2013 14:36:15 +0000 (14:36 +0000)]
Don't round quadrature points

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2684 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSync libifa-rpf with RPF 0.10
jpritikin [Sat, 6 Jul 2013 14:36:05 +0000 (14:36 +0000)]
Sync libifa-rpf with RPF 0.10

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2683 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSuggest that expectations don't need to know about free parameters
jpritikin [Wed, 3 Jul 2013 13:07:34 +0000 (13:07 +0000)]
Suggest that expectations don't need to know about free parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2682 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove debugging for FitContext
jpritikin [Wed, 3 Jul 2013 13:07:26 +0000 (13:07 +0000)]
Improve debugging for FitContext

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2681 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't communicate unused dependency information
jpritikin [Wed, 3 Jul 2013 13:07:19 +0000 (13:07 +0000)]
Don't communicate unused dependency information

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2680 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove MarkDirty out of ComputeOnce
jpritikin [Wed, 3 Jul 2013 13:07:10 +0000 (13:07 +0000)]
Move MarkDirty out of ComputeOnce

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2679 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoStore fit function name (regression fix?)
jpritikin [Wed, 3 Jul 2013 13:07:00 +0000 (13:07 +0000)]
Store fit function name (regression fix?)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2678 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd verbose option to omxComputeIterate
jpritikin [Tue, 2 Jul 2013 11:17:49 +0000 (11:17 +0000)]
Add verbose option to omxComputeIterate

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2677 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate regression tests
jpritikin [Fri, 28 Jun 2013 09:43:08 +0000 (09:43 +0000)]
Update regression tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2676 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoChanging from 3PL to 4PL gives all new random numbers
jpritikin [Fri, 28 Jun 2013 09:42:57 +0000 (09:42 +0000)]
Changing from 3PL to 4PL gives all new random numbers

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2675 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSplit BA81 into a fit function and expectation
jpritikin [Fri, 28 Jun 2013 09:42:43 +0000 (09:42 +0000)]
Split BA81 into a fit function and expectation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2674 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd ComputeAssign
jpritikin [Fri, 28 Jun 2013 09:42:14 +0000 (09:42 +0000)]
Add ComputeAssign

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2673 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd test for dmvnorm
jpritikin [Fri, 28 Jun 2013 09:41:57 +0000 (09:41 +0000)]
Add test for dmvnorm

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2672 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix compile errors after merge
jpritikin [Fri, 28 Jun 2013 09:41:43 +0000 (09:41 +0000)]
Fix compile errors after merge

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2671 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEliminate Rprintf
jpritikin [Fri, 28 Jun 2013 09:41:25 +0000 (09:41 +0000)]
Eliminate Rprintf

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2670 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename
jpritikin [Fri, 28 Jun 2013 09:41:15 +0000 (09:41 +0000)]
Rename

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2669 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Use regular latent distribution for EAP instead of flat prior
jpritikin [Fri, 28 Jun 2013 09:40:55 +0000 (09:40 +0000)]
ifa: Use regular latent distribution for EAP instead of flat prior

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2668 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Store latent mean & cov in regular MxMatrix
jpritikin [Fri, 28 Jun 2013 09:40:45 +0000 (09:40 +0000)]
ifa: Store latent mean & cov in regular MxMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2667 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Add options for EAP scores
jpritikin [Fri, 28 Jun 2013 09:40:26 +0000 (09:40 +0000)]
ifa: Add options for EAP scores

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2666 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: No point in *2 the EM LL; that's just for fitting
jpritikin [Fri, 28 Jun 2013 09:40:14 +0000 (09:40 +0000)]
ifa: No point in *2 the EM LL; that's just for fitting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2665 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: More multigroup prep; two-tier EAP
jpritikin [Fri, 28 Jun 2013 09:40:04 +0000 (09:40 +0000)]
ifa: More multigroup prep; two-tier EAP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2664 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: dmvnorm
jpritikin [Fri, 28 Jun 2013 09:39:46 +0000 (09:39 +0000)]
ifa: dmvnorm

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2663 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Refactor to avoid some redundent calculation
jpritikin [Fri, 28 Jun 2013 09:39:33 +0000 (09:39 +0000)]
ifa: Refactor to avoid some redundent calculation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2662 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Remove G-H quadrature; prepare proper multigroup
jpritikin [Fri, 28 Jun 2013 09:39:25 +0000 (09:39 +0000)]
ifa: Remove G-H quadrature; prepare proper multigroup

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2661 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Add commas to debugging tool
jpritikin [Fri, 28 Jun 2013 09:39:14 +0000 (09:39 +0000)]
ifa: Add commas to debugging tool

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2660 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Remove old Bayesian prior code
jpritikin [Fri, 28 Jun 2013 09:39:06 +0000 (09:39 +0000)]
ifa: Remove old Bayesian prior code

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2659 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Handle new deriv API
jpritikin [Fri, 28 Jun 2013 09:38:54 +0000 (09:38 +0000)]
ifa: Handle new deriv API

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2658 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Reorg for Hessian
jpritikin [Fri, 28 Jun 2013 09:38:42 +0000 (09:38 +0000)]
ifa: Reorg for Hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2657 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Drop support for out-of-bound parameters
jpritikin [Fri, 28 Jun 2013 09:38:34 +0000 (09:38 +0000)]
ifa: Drop support for out-of-bound parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2656 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Allow specification of the starting parameters for the 1st E step
jpritikin [Fri, 28 Jun 2013 09:38:25 +0000 (09:38 +0000)]
ifa: Allow specification of the starting parameters for the 1st E step

This is needed to explore the likelihood surface with the E step fixed.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2655 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Analytic Hessian
jpritikin [Fri, 28 Jun 2013 09:38:16 +0000 (09:38 +0000)]
ifa: Analytic Hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2654 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Remove support for custom RPF written in R
jpritikin [Fri, 28 Jun 2013 09:38:01 +0000 (09:38 +0000)]
ifa: Remove support for custom RPF written in R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2653 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Handle rename
jpritikin [Fri, 28 Jun 2013 09:37:51 +0000 (09:37 +0000)]
ifa: Handle rename

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2652 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Snapshot
jpritikin [Fri, 28 Jun 2013 09:37:43 +0000 (09:37 +0000)]
ifa: Snapshot

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2651 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Two-tier unbiased
jpritikin [Fri, 28 Jun 2013 09:37:27 +0000 (09:37 +0000)]
ifa: Two-tier unbiased

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2650 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: snapshot with irt-2d working
jpritikin [Fri, 28 Jun 2013 09:37:16 +0000 (09:37 +0000)]
ifa: snapshot with irt-2d working

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2649 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Remove ghquad
jpritikin [Fri, 28 Jun 2013 09:37:04 +0000 (09:37 +0000)]
ifa: Remove ghquad

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2648 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Combine fit & gradient calculation
jpritikin [Fri, 28 Jun 2013 09:36:52 +0000 (09:36 +0000)]
ifa: Combine fit & gradient calculation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2647 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Update for 2013
jpritikin [Fri, 28 Jun 2013 09:36:40 +0000 (09:36 +0000)]
ifa: Update for 2013

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2646 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Fixup
jpritikin [Fri, 28 Jun 2013 09:36:31 +0000 (09:36 +0000)]
ifa: Fixup

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2645 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Add bias studies
jpritikin [Fri, 28 Jun 2013 09:36:22 +0000 (09:36 +0000)]
ifa: Add bias studies

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2644 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Add checks for invalid priors & gradients
jpritikin [Fri, 28 Jun 2013 09:36:10 +0000 (09:36 +0000)]
ifa: Add checks for invalid priors & gradients

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2643 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Add debug code
jpritikin [Fri, 28 Jun 2013 09:36:02 +0000 (09:36 +0000)]
ifa: Add debug code

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2642 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Adjust interpretation of design matrix
jpritikin [Fri, 28 Jun 2013 09:35:54 +0000 (09:35 +0000)]
ifa: Adjust interpretation of design matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2641 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Doc some heuristics about EAP quadrature
jpritikin [Fri, 28 Jun 2013 09:35:47 +0000 (09:35 +0000)]
ifa: Doc some heuristics about EAP quadrature

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2640 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Use R_GetCCallable to access libirt-rpf
jpritikin [Fri, 28 Jun 2013 09:35:38 +0000 (09:35 +0000)]
ifa: Use R_GetCCallable to access libirt-rpf

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2639 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Update for new librpf API
jpritikin [Fri, 28 Jun 2013 09:35:23 +0000 (09:35 +0000)]
ifa: Update for new librpf API

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2638 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Enable analytic gradients
jpritikin [Fri, 28 Jun 2013 09:35:10 +0000 (09:35 +0000)]
ifa: Enable analytic gradients

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2637 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: mdim gradient working, all tests pass
jpritikin [Fri, 28 Jun 2013 09:35:00 +0000 (09:35 +0000)]
ifa: mdim gradient working, all tests pass

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2636 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Trade some memory for performance
jpritikin [Fri, 28 Jun 2013 09:34:49 +0000 (09:34 +0000)]
ifa: Trade some memory for performance

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2635 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: snapshot
jpritikin [Fri, 28 Jun 2013 09:34:39 +0000 (09:34 +0000)]
ifa: snapshot

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2634 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: EAP reorg
jpritikin [Fri, 28 Jun 2013 09:34:28 +0000 (09:34 +0000)]
ifa: EAP reorg

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2633 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Adjust tests after adding prior for mdim_drm
jpritikin [Fri, 28 Jun 2013 09:34:20 +0000 (09:34 +0000)]
ifa: Adjust tests after adding prior for mdim_drm

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2632 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Basic EAP working, regression tests checked & updated
jpritikin [Fri, 28 Jun 2013 09:34:11 +0000 (09:34 +0000)]
ifa: Basic EAP working, regression tests checked & updated

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2631 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: snapshot
jpritikin [Fri, 28 Jun 2013 09:33:57 +0000 (09:33 +0000)]
ifa: snapshot

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2630 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: Gradients
jpritikin [Fri, 28 Jun 2013 09:33:45 +0000 (09:33 +0000)]
ifa: Gradients

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2629 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoifa: rowMap
jpritikin [Fri, 28 Jun 2013 09:33:32 +0000 (09:33 +0000)]
ifa: rowMap

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2628 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1