openmx:openmx.git
2 years agoRewrite NLOPT integration nloptr
Joshua Nathaniel Pritikin [Sun, 25 Jan 2015 21:17:34 +0000 (16:17 -0500)]
Rewrite NLOPT integration

2 years agoInternally convert GREATER_THAN constraints into LESS_THAN constraints
Joshua Nathaniel Pritikin [Sun, 1 Feb 2015 17:55:41 +0000 (12:55 -0500)]
Internally convert GREATER_THAN constraints into LESS_THAN constraints

2 years agoMake model identified (somebody forgot to include the means)
Joshua Nathaniel Pritikin [Sun, 1 Feb 2015 22:10:25 +0000 (17:10 -0500)]
Make model identified (somebody forgot to include the means)

2 years agoCSOLNP fails if the sense of the constraint is reversed
jpritikin [Sun, 1 Feb 2015 20:17:11 +0000 (20:17 +0000)]
CSOLNP fails if the sense of the constraint is reversed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4205 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoMake test model that's not supposed to use derivatives actually not use them, and...
rkirkpatrick [Fri, 30 Jan 2015 15:38:05 +0000 (15:38 +0000)]
Make test model that's not supposed to use derivatives actually not use them, and patch bug the faulty test model was hiding.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4204 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoManifest paths allowed for LISREL
mhunter [Fri, 30 Jan 2015 04:23:53 +0000 (04:23 +0000)]
Manifest paths allowed for LISREL

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4203 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoLatent paths allowed for LISREL
mhunter [Fri, 30 Jan 2015 04:04:31 +0000 (04:04 +0000)]
Latent paths allowed for LISREL

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4202 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd lower bounds on the variances
jpritikin [Thu, 29 Jan 2015 13:27:24 +0000 (13:27 +0000)]
Add lower bounds on the variances

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4201 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoChange from Rf_protect() statements to use of the ScopedProtect class.
rkirkpatrick [Wed, 28 Jan 2015 18:44:15 +0000 (18:44 +0000)]
Change from Rf_protect() statements to use of the ScopedProtect class.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4200 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoClean up and streamline code for GREML derivatives.
rkirkpatrick [Wed, 28 Jan 2015 18:19:16 +0000 (18:19 +0000)]
Clean up and streamline code for GREML derivatives.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4199 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoGREML test script should make sure the model runs both with and without analytic...
rkirkpatrick [Wed, 28 Jan 2015 18:10:07 +0000 (18:10 +0000)]
GREML test script should make sure the model runs both with and without analytic derivatives.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4198 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 12/12
jpritikin [Wed, 28 Jan 2015 15:47:27 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 12/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4197 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 11/12
jpritikin [Wed, 28 Jan 2015 15:47:25 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 11/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4196 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 10/12
jpritikin [Wed, 28 Jan 2015 15:47:22 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 10/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4195 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 9/12
jpritikin [Wed, 28 Jan 2015 15:47:19 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 9/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4194 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 8/12
jpritikin [Wed, 28 Jan 2015 15:47:16 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 8/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4193 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 7/12
jpritikin [Wed, 28 Jan 2015 15:47:12 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 7/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4192 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 6/12
jpritikin [Wed, 28 Jan 2015 15:47:11 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 6/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4191 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 5/12
jpritikin [Wed, 28 Jan 2015 15:47:09 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 5/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4190 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 4/12
jpritikin [Wed, 28 Jan 2015 15:47:07 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 4/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4189 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 3/12
jpritikin [Wed, 28 Jan 2015 15:47:05 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 3/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4188 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 2/12
jpritikin [Wed, 28 Jan 2015 15:47:03 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 2/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4187 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCarefully refactor confidence intervals 1/12
jpritikin [Wed, 28 Jan 2015 15:47:01 +0000 (15:47 +0000)]
Carefully refactor confidence intervals 1/12

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4186 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd diag
jpritikin [Wed, 28 Jan 2015 15:46:59 +0000 (15:46 +0000)]
Add diag

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4185 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoInelegantly coded but working implementation of analytic GREML derivatives.
rkirkpatrick [Tue, 27 Jan 2015 20:35:24 +0000 (20:35 +0000)]
Inelegantly coded but working implementation of analytic GREML derivatives.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4184 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoImprove test organization
jpritikin [Tue, 27 Jan 2015 19:10:15 +0000 (19:10 +0000)]
Improve test organization

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4183 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRepair free memory read in debug code (no serious consequences)
jpritikin [Tue, 27 Jan 2015 14:16:54 +0000 (14:16 +0000)]
Repair free memory read in debug code (no serious consequences)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4182 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAllow 'make clean' to succeed without a pre-existing build dir
jpritikin [Tue, 27 Jan 2015 14:16:53 +0000 (14:16 +0000)]
Allow 'make clean' to succeed without a pre-existing build dir

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4181 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoSimplify verbose plumbing
jpritikin [Mon, 26 Jan 2015 16:58:17 +0000 (16:58 +0000)]
Simplify verbose plumbing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4180 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoImprove error message
jpritikin [Mon, 26 Jan 2015 16:58:14 +0000 (16:58 +0000)]
Improve error message

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4179 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoDoc defvar.row argument
jpritikin [Mon, 26 Jan 2015 16:58:12 +0000 (16:58 +0000)]
Doc defvar.row argument

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4178 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoContinue refactor of ComputeGD
jpritikin [Mon, 26 Jan 2015 16:10:24 +0000 (16:10 +0000)]
Continue refactor of ComputeGD

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4177 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRemove commented debug code
jpritikin [Mon, 26 Jan 2015 16:10:21 +0000 (16:10 +0000)]
Remove commented debug code

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4176 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoFactor out diagnostics
jpritikin [Mon, 26 Jan 2015 16:10:19 +0000 (16:10 +0000)]
Factor out diagnostics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4175 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: Move control parameters into CSOLNPFit structure
jpritikin [Mon, 26 Jan 2015 16:10:17 +0000 (16:10 +0000)]
CSOLNP: Move control parameters into CSOLNPFit structure

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4174 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoReimagine CSOLNPFit as GradientOptimizerAPI
jpritikin [Mon, 26 Jan 2015 16:10:14 +0000 (16:10 +0000)]
Reimagine CSOLNPFit as GradientOptimizerAPI

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4173 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoBegin refactor of optimizer interface
jpritikin [Mon, 26 Jan 2015 16:10:11 +0000 (16:10 +0000)]
Begin refactor of optimizer interface

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4172 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoDon't try to nudge zero starts again
jpritikin [Mon, 26 Jan 2015 16:10:09 +0000 (16:10 +0000)]
Don't try to nudge zero starts again

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4171 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoBetter implementation for IterationError
jpritikin [Sat, 24 Jan 2015 11:31:34 +0000 (11:31 +0000)]
Better implementation for IterationError

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4170 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoFix man page for check id
mhunter [Sat, 24 Jan 2015 05:37:35 +0000 (05:37 +0000)]
Fix man page for check id

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4169 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd ability to do means paths for LISREL type models.
mhunter [Sat, 24 Jan 2015 00:46:46 +0000 (00:46 +0000)]
Add ability to do means paths for LISREL type models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4168 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoTweak suggested debug options
jpritikin [Fri, 23 Jan 2015 21:54:20 +0000 (21:54 +0000)]
Tweak suggested debug options

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4167 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoTiny code cleanup of NPSOL CIs
jpritikin [Fri, 23 Jan 2015 21:54:17 +0000 (21:54 +0000)]
Tiny code cleanup of NPSOL CIs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4166 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoReport iteration error when threads are enabled
jpritikin [Fri, 23 Jan 2015 21:54:13 +0000 (21:54 +0000)]
Report iteration error when threads are enabled

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4165 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoDo not freak out. It is just updating the copyright.
mhunter [Fri, 23 Jan 2015 21:19:50 +0000 (21:19 +0000)]
Do not freak out.  It is just updating the copyright.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4164 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCorrected a bug where out-of-order threshold errors were not reported.
tbrick [Fri, 23 Jan 2015 14:20:19 +0000 (14:20 +0000)]
Corrected a bug where out-of-order threshold errors were not reported.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4163 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoImprove Hessian inversion in mxStandardizeRAMpaths().
rkirkpatrick [Thu, 22 Jan 2015 16:26:10 +0000 (16:26 +0000)]
Improve Hessian inversion in mxStandardizeRAMpaths().

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4162 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoPermit run-time toggling of protect depth diagnostics
jpritikin [Tue, 20 Jan 2015 20:34:57 +0000 (20:34 +0000)]
Permit run-time toggling of protect depth diagnostics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4161 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRequest GREML fixed effects via argument to expectation, not via compute plan, and...
rkirkpatrick [Tue, 20 Jan 2015 17:23:21 +0000 (17:23 +0000)]
Request GREML fixed effects via argument to expectation, not via compute plan, and move calculation of regression coefficients to the attribute-population step.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4160 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRemove oudated use of mx*Objective
mhunter [Fri, 16 Jan 2015 19:59:39 +0000 (19:59 +0000)]
Remove oudated use of mx*Objective

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4159 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoGREML fixed effects and test model; code cleanup.
rkirkpatrick [Fri, 16 Jan 2015 17:01:15 +0000 (17:01 +0000)]
GREML fixed effects and test model; code cleanup.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4158 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoFix test for optimizer; additionally test for mxCondenseMatrixSlots default
jpritikin [Fri, 16 Jan 2015 15:25:30 +0000 (15:25 +0000)]
Fix test for optimizer; additionally test for mxCondenseMatrixSlots default

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4157 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoTidy Makevars
jpritikin [Fri, 16 Jan 2015 15:25:29 +0000 (15:25 +0000)]
Tidy Makevars

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4156 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRepair package dependencies
jpritikin [Fri, 16 Jan 2015 15:25:29 +0000 (15:25 +0000)]
Repair package dependencies

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4155 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRevert recent CSOLNP changes
jpritikin [Fri, 16 Jan 2015 15:25:29 +0000 (15:25 +0000)]
Revert recent CSOLNP changes

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4154 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoEnsure memory is not overwritten
jpritikin [Fri, 16 Jan 2015 15:25:28 +0000 (15:25 +0000)]
Ensure memory is not overwritten

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4153 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoDocumentation for check identification function
mhunter [Thu, 15 Jan 2015 23:38:54 +0000 (23:38 +0000)]
Documentation for check identification function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4152 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: problems in recent Eigen commits fixed
mzahery [Thu, 15 Jan 2015 20:20:23 +0000 (20:20 +0000)]
CSOLNP: problems in recent Eigen commits fixed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4151 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoSuggest gcc option -Og for debugging compatible optimization
jpritikin [Wed, 14 Jan 2015 20:20:16 +0000 (20:20 +0000)]
Suggest gcc option -Og for debugging compatible optimization

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4150 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agocheck regression for bug where models cant be re-run
tbates [Wed, 14 Jan 2015 17:35:20 +0000 (17:35 +0000)]
check regression for bug where models cant be re-run

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4149 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoSwitch from Eigen::Map to the safer EigenMatrixAdaptor; trim deadcode.
rkirkpatrick [Wed, 14 Jan 2015 15:32:49 +0000 (15:32 +0000)]
Switch from Eigen::Map to the safer EigenMatrixAdaptor; trim deadcode.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4148 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoSmall fix for CSOLNP: Gradually writing subnp function in Eigen
jpritikin [Wed, 14 Jan 2015 14:30:05 +0000 (14:30 +0000)]
Small fix for CSOLNP: Gradually writing subnp function in Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4147 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agotest if OpenMx is defaulting to NPSOL
tbates [Wed, 14 Jan 2015 13:37:30 +0000 (13:37 +0000)]
test if OpenMx is defaulting to NPSOL

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4146 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRepair selection of default optimizer
jpritikin [Tue, 13 Jan 2015 20:39:45 +0000 (20:39 +0000)]
Repair selection of default optimizer

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4145 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoMake EigenMatrixAdaptor compile (oops)
jpritikin [Tue, 13 Jan 2015 19:01:40 +0000 (19:01 +0000)]
Make EigenMatrixAdaptor compile (oops)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4144 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd EigenMatrixAdaptor
jpritikin [Tue, 13 Jan 2015 18:45:56 +0000 (18:45 +0000)]
Add EigenMatrixAdaptor

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4143 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: correcting revision 4137
mzahery [Tue, 13 Jan 2015 18:04:39 +0000 (18:04 +0000)]
CSOLNP: correcting revision 4137

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4142 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoMinimal, rough implementation of GREML.
rkirkpatrick [Tue, 13 Jan 2015 17:22:54 +0000 (17:22 +0000)]
Minimal, rough implementation of GREML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4141 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoUpdate CHANGES
jpritikin [Sat, 10 Jan 2015 01:34:16 +0000 (01:34 +0000)]
Update CHANGES

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4140 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: Writing subnp function in Eigen (6)
mzahery [Fri, 9 Jan 2015 21:01:31 +0000 (21:01 +0000)]
CSOLNP: Writing subnp function in Eigen (6)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4139 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: Writing subnp function in Eigen (5)
mzahery [Fri, 9 Jan 2015 20:45:28 +0000 (20:45 +0000)]
CSOLNP: Writing subnp function in Eigen (5)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4138 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: Writing subnp function in Eigen (4)
mzahery [Fri, 9 Jan 2015 20:33:38 +0000 (20:33 +0000)]
CSOLNP: Writing subnp function in Eigen (4)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4137 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: Writing subnp function in Eigen (3)
mzahery [Fri, 9 Jan 2015 20:15:35 +0000 (20:15 +0000)]
CSOLNP: Writing subnp function in Eigen (3)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4136 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: Writing subnp function in Eigen (2)
mzahery [Fri, 9 Jan 2015 20:07:20 +0000 (20:07 +0000)]
CSOLNP: Writing subnp function in Eigen (2)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4135 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: Gradually writing subnp function in Eigen (1)
mzahery [Fri, 9 Jan 2015 19:57:06 +0000 (19:57 +0000)]
CSOLNP: Gradually writing subnp function in Eigen (1)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4134 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoBump version number
jpritikin [Fri, 9 Jan 2015 14:50:30 +0000 (14:50 +0000)]
Bump version number

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4133 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoPrep for release
jpritikin [Fri, 9 Jan 2015 14:49:03 +0000 (14:49 +0000)]
Prep for release

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4132 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agolibnpsol suitable for fortran 4.9
tbates [Fri, 9 Jan 2015 14:45:32 +0000 (14:45 +0000)]
libnpsol suitable for fortran 4.9

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4131 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoDeadcode
jpritikin [Wed, 7 Jan 2015 18:48:30 +0000 (18:48 +0000)]
Deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4130 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoUse 'int' for Eigen rows and columns
jpritikin [Wed, 7 Jan 2015 18:46:26 +0000 (18:46 +0000)]
Use 'int' for Eigen rows and columns

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4129 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd omxEnsureColumnMajor API
jpritikin [Wed, 7 Jan 2015 18:45:23 +0000 (18:45 +0000)]
Add omxEnsureColumnMajor API

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4128 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRemove '#define EPSILON'; clashes with stan headers
jpritikin [Wed, 7 Jan 2015 16:05:41 +0000 (16:05 +0000)]
Remove '#define EPSILON'; clashes with stan headers

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4127 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoPrevent Varadhan2008 from failing near convergence
jpritikin [Wed, 7 Jan 2015 16:04:24 +0000 (16:04 +0000)]
Prevent Varadhan2008 from failing near convergence

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4126 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoThrow error on attempt to invert incomplete Hessian
jpritikin [Wed, 7 Jan 2015 16:03:36 +0000 (16:03 +0000)]
Throw error on attempt to invert incomplete Hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4125 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoCSOLNP: Correct exclusion of inequality constraints from gradient/Hessian
jpritikin [Fri, 19 Dec 2014 16:05:02 +0000 (16:05 +0000)]
CSOLNP: Correct exclusion of inequality constraints from gradient/Hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4124 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRemove unused variable
jpritikin [Thu, 18 Dec 2014 19:29:35 +0000 (19:29 +0000)]
Remove unused variable

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4123 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoWhen checkpointing fit, record who requested it
jpritikin [Thu, 18 Dec 2014 18:47:17 +0000 (18:47 +0000)]
When checkpointing fit, record who requested it

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4122 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAllow test to run on both optimizers
jpritikin [Thu, 18 Dec 2014 18:41:04 +0000 (18:41 +0000)]
Allow test to run on both optimizers

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4121 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd CIs to continuous time model
jpritikin [Thu, 18 Dec 2014 18:41:03 +0000 (18:41 +0000)]
Add CIs to continuous time model

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4120 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd some omxCheckCloseEnough
jpritikin [Thu, 18 Dec 2014 18:41:01 +0000 (18:41 +0000)]
Add some omxCheckCloseEnough

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4119 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoDeadcode removal
jpritikin [Thu, 18 Dec 2014 18:40:59 +0000 (18:40 +0000)]
Deadcode removal

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4118 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoRestore parallel processing for CIs
jpritikin [Thu, 18 Dec 2014 18:40:57 +0000 (18:40 +0000)]
Restore parallel processing for CIs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4117 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd a checkpoint entry for each CI attempt
jpritikin [Thu, 18 Dec 2014 18:40:54 +0000 (18:40 +0000)]
Add a checkpoint entry for each CI attempt

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4116 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd "Checkpoint Fullpath" to override output destination
jpritikin [Thu, 18 Dec 2014 18:40:52 +0000 (18:40 +0000)]
Add "Checkpoint Fullpath" to override output destination

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4115 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoMake mxOption(model, val) return the global setting or the model's override
jpritikin [Thu, 18 Dec 2014 18:40:50 +0000 (18:40 +0000)]
Make mxOption(model, val) return the global setting or the model's override

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4114 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoMove to failing
jpritikin [Thu, 18 Dec 2014 12:07:18 +0000 (12:07 +0000)]
Move to failing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4113 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd WLS standard error and chi-square functions
mhunter [Thu, 18 Dec 2014 04:29:58 +0000 (04:29 +0000)]
Add WLS standard error and chi-square functions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4112 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoConsolidate starting value nudging logic in ComputeGD
jpritikin [Thu, 18 Dec 2014 03:51:10 +0000 (03:51 +0000)]
Consolidate starting value nudging logic in ComputeGD

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4111 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoTry harder to keep CIs ordered properly vs estimate
jpritikin [Thu, 18 Dec 2014 03:51:07 +0000 (03:51 +0000)]
Try harder to keep CIs ordered properly vs estimate

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4110 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

2 years agoAdd copyright to Multilevel example
mhunter [Wed, 17 Dec 2014 20:44:42 +0000 (20:44 +0000)]
Add copyright to Multilevel example

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4109 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1