openmx:openmx.git
3 years agoCSOLNP: Remove superfluous assignment
jpritikin [Fri, 5 Dec 2014 14:25:33 +0000 (14:25 +0000)]
CSOLNP: Remove superfluous assignment

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4050 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove deadcode
jpritikin [Fri, 5 Dec 2014 14:21:45 +0000 (14:21 +0000)]
CSOLNP: Remove deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4049 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Converting function add to Eigen
mzahery [Fri, 5 Dec 2014 03:57:28 +0000 (03:57 +0000)]
CSOLNP: Converting function add to Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4048 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Converting functions subtract and timess to Eigen
mzahery [Fri, 5 Dec 2014 00:46:05 +0000 (00:46 +0000)]
CSOLNP: Converting functions subtract and timess to Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4047 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Converting functions subset, copy, multiply, and divide to Eigen
mzahery [Fri, 5 Dec 2014 00:36:49 +0000 (00:36 +0000)]
CSOLNP: Converting functions subset, copy, multiply, and divide to Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4046 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: reapplying revisions 3976-3996
mzahery [Fri, 5 Dec 2014 00:26:36 +0000 (00:26 +0000)]
CSOLNP: reapplying revisions 3976-3996

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4045 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd gcc 4.9 support (same binary as gcc 4.8)
jpritikin [Thu, 4 Dec 2014 20:30:01 +0000 (20:30 +0000)]
Add gcc 4.9 support (same binary as gcc 4.8)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4044 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd to summary check
mhunter [Thu, 4 Dec 2014 17:20:49 +0000 (17:20 +0000)]
Add to summary check

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4043 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoWLS maybe working for joint.
mhunter [Wed, 3 Dec 2014 19:06:13 +0000 (19:06 +0000)]
WLS maybe working for joint.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4042 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoHelpful error when SaturatedLikelihood is given a list of two.
mhunter [Wed, 3 Dec 2014 19:05:13 +0000 (19:05 +0000)]
Helpful error when SaturatedLikelihood is given a list of two.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4041 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoChange the fake definition variable value for easier indexing
jpritikin [Tue, 2 Dec 2014 19:25:05 +0000 (19:25 +0000)]
Change the fake definition variable value for easier indexing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4040 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Simplify global variables moved to a struct
jpritikin [Tue, 2 Dec 2014 17:04:03 +0000 (17:04 +0000)]
CSOLNP: Simplify global variables moved to a struct

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4039 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix incorrect merge
jpritikin [Tue, 2 Dec 2014 16:49:27 +0000 (16:49 +0000)]
Fix incorrect merge

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4038 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoLoad fake data into definition variables for FF_COMPUTE_INITIAL_FIT
jpritikin [Tue, 2 Dec 2014 16:07:19 +0000 (16:07 +0000)]
Load fake data into definition variables for FF_COMPUTE_INITIAL_FIT

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4037 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRework Algebra API
jpritikin [Tue, 2 Dec 2014 16:07:15 +0000 (16:07 +0000)]
Rework Algebra API

Algebra are a composable unit that only understand how to
recompute. It is improper that they should understand all
of the flavors of omxFFCompute.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4036 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMake tests easier to run from the top level dir
jpritikin [Tue, 2 Dec 2014 16:07:02 +0000 (16:07 +0000)]
Make tests easier to run from the top level dir

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4035 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoProhibit mxComputeOnce on raw algebra
jpritikin [Tue, 2 Dec 2014 16:06:58 +0000 (16:06 +0000)]
Prohibit mxComputeOnce on raw algebra

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4034 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: global variables moved to a struct
mzahery [Tue, 2 Dec 2014 14:25:27 +0000 (14:25 +0000)]
CSOLNP: global variables moved to a struct

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4033 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix saturated DoF for raw data when only some of the variables are used. Update...
mhunter [Tue, 2 Dec 2014 07:01:22 +0000 (07:01 +0000)]
Fix saturated DoF for raw data when only some of the variables are used.  Update documentation for summary.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4032 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove warnings from AlternativeApproaches
mhunter [Tue, 2 Dec 2014 00:36:58 +0000 (00:36 +0000)]
Remove warnings from AlternativeApproaches

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4031 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoBug fix for refs models with cov data
mhunter [Tue, 2 Dec 2014 00:35:48 +0000 (00:35 +0000)]
Bug fix for refs models with cov data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4030 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: reverted version checked in
mzahery [Tue, 2 Dec 2014 00:34:32 +0000 (00:34 +0000)]
CSOLNP: reverted version checked in

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4029 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRefrain from evaluating MxMatrix in the front-end
jpritikin [Wed, 26 Nov 2014 02:46:30 +0000 (02:46 +0000)]
Refrain from evaluating MxMatrix in the front-end

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4028 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRefactor computation of CFI, TLI, & RMSEA
jpritikin [Wed, 26 Nov 2014 02:46:28 +0000 (02:46 +0000)]
Refactor computation of CFI, TLI, & RMSEA

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4027 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove confusing comments
jpritikin [Wed, 26 Nov 2014 02:46:26 +0000 (02:46 +0000)]
Remove confusing comments

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4026 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMove demos to nightly
jpritikin [Wed, 26 Nov 2014 02:46:25 +0000 (02:46 +0000)]
Move demos to nightly

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4025 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPrevent SEGV on ordinal columns with no thresholds
jpritikin [Wed, 26 Nov 2014 02:46:23 +0000 (02:46 +0000)]
Prevent SEGV on ordinal columns with no thresholds

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4024 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEnsure continuous all-NA column is not run through mxFactor
jpritikin [Wed, 26 Nov 2014 02:46:21 +0000 (02:46 +0000)]
Ensure continuous all-NA column is not run through mxFactor

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4023 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd comment about multinomial degrees of freedom
jpritikin [Wed, 26 Nov 2014 02:46:19 +0000 (02:46 +0000)]
Add comment about multinomial degrees of freedom

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4022 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEnable --force-biarch for Windows fat binaries & remove obsolete rules
jpritikin [Wed, 26 Nov 2014 02:22:24 +0000 (02:22 +0000)]
Enable --force-biarch for Windows fat binaries & remove obsolete rules

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4021 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoupdate to use twinData instead of myTwinData (a duplicate file)
tbates [Sun, 23 Nov 2014 19:37:17 +0000 (19:37 +0000)]
update to use twinData instead of myTwinData (a duplicate file)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4020 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoupdate to use twinData instead of myTwinData (a duplicate file)
tbates [Sun, 23 Nov 2014 19:33:43 +0000 (19:33 +0000)]
update to use twinData instead of myTwinData (a duplicate file)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4019 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoupdate to use twinData instead of myTwinData (a duplicate file)
tbates [Sun, 23 Nov 2014 19:13:02 +0000 (19:13 +0000)]
update to use twinData instead of myTwinData (a duplicate file)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4018 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agodocumenting data file used in ordinal twin example
tbates [Sun, 23 Nov 2014 19:11:15 +0000 (19:11 +0000)]
documenting data file used in ordinal  twin example

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4017 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agodocumenting data file used in extended twin example
tbates [Sun, 23 Nov 2014 18:59:42 +0000 (18:59 +0000)]
documenting data file used in extended twin example

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4016 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agodocumenting data file used in extended twin example
tbates [Sun, 23 Nov 2014 18:59:39 +0000 (18:59 +0000)]
documenting data file used in extended twin example

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4015 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agodocumenting data file used in extended twin example
tbates [Sun, 23 Nov 2014 18:59:34 +0000 (18:59 +0000)]
documenting data file used in extended twin example

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4014 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agodocumenting data file used in extended twin example
tbates [Sun, 23 Nov 2014 18:59:31 +0000 (18:59 +0000)]
documenting data file used in extended twin example

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4013 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agodocumenting data file used in extended twin example
tbates [Sun, 23 Nov 2014 18:59:14 +0000 (18:59 +0000)]
documenting data file used in extended twin example

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4012 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoremoving unused fields from Rd files
tbates [Sun, 23 Nov 2014 18:52:59 +0000 (18:52 +0000)]
removing unused fields from Rd files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4011 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agodocumenting usage of numHess2 data file
tbates [Sun, 23 Nov 2014 13:57:28 +0000 (13:57 +0000)]
documenting usage of numHess2 data file

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4010 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agodocumenting numHess1 data file
tbates [Sun, 23 Nov 2014 13:57:06 +0000 (13:57 +0000)]
documenting numHess1 data file

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4009 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agolinking logical fns to omxLogicale
tbates [Sat, 22 Nov 2014 20:38:10 +0000 (20:38 +0000)]
linking logical fns to omxLogicale

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4008 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agominor text improvement to include data type
tbates [Sat, 22 Nov 2014 19:44:13 +0000 (19:44 +0000)]
minor text improvement to include data type

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4007 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoadd list describing traits, minor text improvements
tbates [Sat, 22 Nov 2014 19:40:46 +0000 (19:40 +0000)]
add list describing traits, minor text improvements

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4006 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdding an Rd for the Bollen example data file
tbates [Sat, 22 Nov 2014 19:36:58 +0000 (19:36 +0000)]
Adding an Rd for the Bollen example data file

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4005 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCorrect my middle initial.
mhunter [Thu, 20 Nov 2014 17:35:57 +0000 (17:35 +0000)]
Correct my middle initial.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4004 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImprove backwards-compatiblity of our use of the MxMatrix .persist slot.
rkirkpatrick [Wed, 19 Nov 2014 18:48:08 +0000 (18:48 +0000)]
Improve backwards-compatiblity of our use of the MxMatrix .persist slot.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4003 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSpell Hunter's first name correctly
jpritikin [Tue, 18 Nov 2014 20:40:21 +0000 (20:40 +0000)]
Spell Hunter's first name correctly

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4002 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix calculation of the saturated -2LL for IFA models
jpritikin [Tue, 18 Nov 2014 02:39:17 +0000 (02:39 +0000)]
Fix calculation of the saturated -2LL for IFA models

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4001 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd some warning about CSOLNP
jpritikin [Fri, 14 Nov 2014 14:16:46 +0000 (14:16 +0000)]
Add some warning about CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4000 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd hint about infeasible starting values (per Mike Neale)
jpritikin [Wed, 12 Nov 2014 00:02:15 +0000 (00:02 +0000)]
Add hint about infeasible starting values (per Mike Neale)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3999 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRework capture of errors & warnings
jpritikin [Wed, 12 Nov 2014 00:02:11 +0000 (00:02 +0000)]
Rework capture of errors & warnings

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3998 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPermit running test from top dir
jpritikin [Wed, 12 Nov 2014 00:02:10 +0000 (00:02 +0000)]
Permit running test from top dir

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3997 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Unravel some confused Matrix resizing
jpritikin [Sun, 9 Nov 2014 22:16:11 +0000 (22:16 +0000)]
CSOLNP: Unravel some confused Matrix resizing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3996 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Allow 0 coeff matrices; init to NaN instead of 1.0
jpritikin [Sun, 9 Nov 2014 20:56:46 +0000 (20:56 +0000)]
CSOLNP: Allow 0 coeff matrices; init to NaN instead of 1.0

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3995 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Avoid allocation to report gradient
jpritikin [Sun, 9 Nov 2014 20:56:43 +0000 (20:56 +0000)]
CSOLNP: Avoid allocation to report gradient

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3994 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Add a varient of subset that copies out to Eigen::MatrixBase
jpritikin [Sun, 9 Nov 2014 20:56:40 +0000 (20:56 +0000)]
CSOLNP: Add a varient of subset that copies out to Eigen::MatrixBase

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3993 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Eliminate 2 instances of fillMatrix
jpritikin [Sun, 9 Nov 2014 20:56:36 +0000 (20:56 +0000)]
CSOLNP: Eliminate 2 instances of fillMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3992 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Shorten lifetime of index variable
jpritikin [Sat, 8 Nov 2014 00:45:06 +0000 (00:45 +0000)]
CSOLNP: Shorten lifetime of index variable

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3991 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Convert a little bit of subnp to Eigen
jpritikin [Sat, 8 Nov 2014 00:45:04 +0000 (00:45 +0000)]
CSOLNP: Convert a little bit of subnp to Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3990 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: For set{Row|Column}InPlace, treat 2nd arg as a vector
jpritikin [Sat, 8 Nov 2014 00:45:03 +0000 (00:45 +0000)]
CSOLNP: For set{Row|Column}InPlace, treat 2nd arg as a vector

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3989 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDon't abort build if NPSOL is not found for a particular compiler
jpritikin [Sat, 8 Nov 2014 00:45:01 +0000 (00:45 +0000)]
Don't abort build if NPSOL is not found for a particular compiler

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3988 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Switch Bcolj to stack allocation
jpritikin [Fri, 7 Nov 2014 20:52:33 +0000 (20:52 +0000)]
CSOLNP: Switch Bcolj to stack allocation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3987 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove negate deadcode
jpritikin [Fri, 7 Nov 2014 20:52:31 +0000 (20:52 +0000)]
CSOLNP: Remove negate deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3986 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Re-express findMax(matrixAbs()) as matrixMaxAbs()
jpritikin [Fri, 7 Nov 2014 20:52:30 +0000 (20:52 +0000)]
CSOLNP: Re-express findMax(matrixAbs()) as matrixMaxAbs()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3985 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Simplify divideByScalar2D & multiplyByScalar2D
jpritikin [Fri, 7 Nov 2014 20:52:28 +0000 (20:52 +0000)]
CSOLNP: Simplify divideByScalar2D & multiplyByScalar2D

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3984 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Covert a few more copyInto -> copyIntoInplace
jpritikin [Fri, 7 Nov 2014 20:52:26 +0000 (20:52 +0000)]
CSOLNP: Covert a few more copyInto -> copyIntoInplace

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3983 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Move sob to stack allocated storage
jpritikin [Fri, 7 Nov 2014 20:52:25 +0000 (20:52 +0000)]
CSOLNP: Move sob to stack allocated storage

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3982 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Move alp to stack allocated storage
jpritikin [Fri, 7 Nov 2014 20:52:23 +0000 (20:52 +0000)]
CSOLNP: Move alp to stack allocated storage

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3981 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Move subnp_ctrl from Matrix to stack allocated Eigen::Array
jpritikin [Fri, 7 Nov 2014 20:52:22 +0000 (20:52 +0000)]
CSOLNP: Move subnp_ctrl from Matrix to stack allocated Eigen::Array

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3980 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Change setColumn to setColumnInplace
jpritikin [Fri, 7 Nov 2014 17:56:07 +0000 (17:56 +0000)]
CSOLNP: Change setColumn to setColumnInplace

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3979 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Change some setRow to setRowInplace
jpritikin [Fri, 7 Nov 2014 17:56:04 +0000 (17:56 +0000)]
CSOLNP: Change some setRow to setRowInplace

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3978 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoOnce constraints are turned into algebras, eliminate objectives from those new algebr...
mhunter [Fri, 7 Nov 2014 17:11:07 +0000 (17:11 +0000)]
Once constraints are turned into algebras, eliminate objectives from those new algebras and replace them with fitfunctions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3977 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Convert some copyInto into copyIntoInplace
jpritikin [Fri, 7 Nov 2014 17:02:50 +0000 (17:02 +0000)]
CSOLNP: Convert some copyInto into copyIntoInplace

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3976 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: options added
mzahery [Fri, 7 Nov 2014 16:15:40 +0000 (16:15 +0000)]
CSOLNP: options added

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3975 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoUpdate citation
jpritikin [Fri, 7 Nov 2014 12:45:22 +0000 (12:45 +0000)]
Update citation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3974 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDrop psych dependency again
jpritikin [Wed, 5 Nov 2014 20:27:49 +0000 (20:27 +0000)]
Drop psych dependency again

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3973 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agorechecked problem files again
hmaes [Wed, 5 Nov 2014 01:29:59 +0000 (01:29 +0000)]
rechecked problem files again

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3972 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDrop psych dependency
jpritikin [Tue, 4 Nov 2014 20:22:39 +0000 (20:22 +0000)]
Drop psych dependency

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3971 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDocument that mxLog will fail in Rgui on Windows
jpritikin [Tue, 4 Nov 2014 17:27:02 +0000 (17:27 +0000)]
Document that mxLog will fail in Rgui on Windows

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3970 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRepair now-piecewise UnivariateTwinAnalysis_PathRaw.R .
rkirkpatrick [Tue, 4 Nov 2014 15:53:13 +0000 (15:53 +0000)]
Repair now-piecewise UnivariateTwinAnalysis_PathRaw.R .

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3969 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRepair now-piecewise UnivariateTwinAnalysis_MatrixRaw.R .
rkirkpatrick [Tue, 4 Nov 2014 15:36:48 +0000 (15:36 +0000)]
Repair now-piecewise UnivariateTwinAnalysis_MatrixRaw.R .

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3968 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRepair now-piecewise TwoFactorModel_MatrixCov.R.
rkirkpatrick [Tue, 4 Nov 2014 15:05:28 +0000 (15:05 +0000)]
Repair now-piecewise TwoFactorModel_MatrixCov.R.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3967 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRepair now-piecewise RowObjectiveFIMLBivariateSaturated.R.
rkirkpatrick [Tue, 4 Nov 2014 14:59:30 +0000 (14:59 +0000)]
Repair now-piecewise RowObjectiveFIMLBivariateSaturated.R.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3966 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd test for mxLog
jpritikin [Tue, 4 Nov 2014 13:05:21 +0000 (13:05 +0000)]
Add test for mxLog

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3965 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoStop with error message if mxLog fails
jpritikin [Tue, 4 Nov 2014 12:43:29 +0000 (12:43 +0000)]
Stop with error message if mxLog fails

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3964 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agofixed some errors
hmaes [Tue, 4 Nov 2014 05:26:09 +0000 (05:26 +0000)]
fixed some errors

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3963 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImport .DollarNames from utils
jpritikin [Tue, 4 Nov 2014 02:51:35 +0000 (02:51 +0000)]
Import .DollarNames from utils

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3962 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agochanges to demo files
hmaes [Mon, 3 Nov 2014 20:48:37 +0000 (20:48 +0000)]
changes to demo files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3961 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agochanges to doc files
hmaes [Mon, 3 Nov 2014 20:44:58 +0000 (20:44 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3960 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRename GetSlotDisplayNames to avoid explicit export in NAMESPACE
jpritikin [Mon, 3 Nov 2014 17:12:16 +0000 (17:12 +0000)]
Rename GetSlotDisplayNames to avoid explicit export in NAMESPACE

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3959 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImport utils for .DollarNames
jpritikin [Mon, 3 Nov 2014 10:50:47 +0000 (10:50 +0000)]
Import utils for .DollarNames

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3958 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReport CIs with NA as NA instead of throwing an error
jpritikin [Sun, 2 Nov 2014 11:47:05 +0000 (11:47 +0000)]
Report CIs with NA as NA instead of throwing an error

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3957 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTemporarily disable NLOPT (didn't mean to revert this)
jpritikin [Sat, 1 Nov 2014 09:07:25 +0000 (09:07 +0000)]
Temporarily disable NLOPT (didn't mean to revert this)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3956 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "CSOLNP: void functions and memory allocation checks added to minor iteration...
jpritikin [Sat, 1 Nov 2014 08:41:46 +0000 (08:41 +0000)]
Revert "CSOLNP: void functions and memory allocation checks added to minor iteration loop"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3955 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "Temporarily disable NLOPT"
jpritikin [Sat, 1 Nov 2014 08:41:43 +0000 (08:41 +0000)]
Revert "Temporarily disable NLOPT"

This reverts commit 855dfbe8729be37651015c9462e35dfc59bbecd9.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3954 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: void functions and memory allocation checks added to minor iteration loop
mzahery [Fri, 31 Oct 2014 06:08:43 +0000 (06:08 +0000)]
CSOLNP: void functions and memory allocation checks added to minor iteration loop

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3953 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTemporarily disable NLOPT
jpritikin [Tue, 28 Oct 2014 18:26:59 +0000 (18:26 +0000)]
Temporarily disable NLOPT

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3952 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCorrectly collapse levels regardless of order
jpritikin [Tue, 28 Oct 2014 16:54:25 +0000 (16:54 +0000)]
Correctly collapse levels regardless of order

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3951 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1