openmx:openmx.git
7 years agoFirst swipe at State duplication for parallelism. Also some changes to subobjective...
tbrick [Thu, 22 Sep 2011 15:33:13 +0000 (15:33 +0000)]
First swipe at State duplication for parallelism.  Also some changes to subobjective functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1792 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRemoving references to "constructor" in error messages.
mspiegel [Mon, 19 Sep 2011 14:14:14 +0000 (14:14 +0000)]
Removing references to "constructor" in error messages.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1791 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded more detailed information to mxMatrix warnings and errors. The new info will...
rgore [Mon, 19 Sep 2011 13:36:19 +0000 (13:36 +0000)]
Added more detailed information to mxMatrix warnings and errors. The new info will specify the exact call to mxMatrix that caused the warning or error. Also added omxCheckWarning, which behaves just like omxCheckError but for warning messages.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1790 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoReplacing sys.call() with imxLocateFunction()
mspiegel [Wed, 14 Sep 2011 14:32:35 +0000 (14:32 +0000)]
Replacing sys.call() with imxLocateFunction()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1788 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoCopying libnpsol.a from gcc4.5 into gcc4.6 directory
mspiegel [Wed, 14 Sep 2011 13:31:34 +0000 (13:31 +0000)]
Copying libnpsol.a from gcc4.5 into gcc4.6 directory

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1787 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoPropagated determinant calculation changes to FIML.
tbrick [Wed, 14 Sep 2011 12:04:55 +0000 (12:04 +0000)]
Propagated determinant calculation changes to FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1786 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing callMethods[] array in backend
mspiegel [Fri, 9 Sep 2011 15:45:53 +0000 (15:45 +0000)]
Fixing callMethods[] array in backend

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1782 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoTimo's log det improvement
restabrook [Fri, 9 Sep 2011 14:25:32 +0000 (14:25 +0000)]
Timo's log det improvement

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1781 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed joint ordinal-continuous bug if thresholds are result of mxAlgebra
mneale [Wed, 7 Sep 2011 13:56:28 +0000 (13:56 +0000)]
Fixed joint ordinal-continuous bug if thresholds are result of mxAlgebra

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1779 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdding "Number of Cores" options to mxOptions()
mspiegel [Wed, 7 Sep 2011 13:29:44 +0000 (13:29 +0000)]
Adding "Number of Cores" options to mxOptions()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1778 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRemoved sQuote{digits} (which gives smart quotes)
tbates [Sun, 4 Sep 2011 15:50:01 +0000 (15:50 +0000)]
Removed sQuote{digits} (which gives smart quotes)
Regularized space around equal and after comma
Added example of using options to set sig digits
added link to options(mxOptions)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1777 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing joint ordinal-continuous bug when extra columns appear in dataset.
mspiegel [Fri, 2 Sep 2011 17:48:40 +0000 (17:48 +0000)]
Fixing joint ordinal-continuous bug when extra columns appear in dataset.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1775 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFirst version of modified RAM subobjective structure.
tbrick [Fri, 2 Sep 2011 08:11:29 +0000 (08:11 +0000)]
First version of modified RAM subobjective structure.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1773 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoCommitting skeleton for PPML transformation in backend.
mspiegel [Thu, 1 Sep 2011 15:27:55 +0000 (15:27 +0000)]
Committing skeleton for PPML transformation in backend.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1772 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSome cleanup to the User Guide.
mspiegel [Wed, 31 Aug 2011 18:55:58 +0000 (18:55 +0000)]
Some cleanup to the User Guide.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1771 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdated ordinal docs
restabrook [Wed, 31 Aug 2011 16:23:58 +0000 (16:23 +0000)]
Updated ordinal docs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1770 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded flag, -mmacosx-version-min=10.4 ,to ensure backwards compatability for Mac...
rgore [Tue, 30 Aug 2011 16:15:32 +0000 (16:15 +0000)]
Added flag, -mmacosx-version-min=10.4 ,to ensure backwards compatability for Mac OS 10.4 and 10.5.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1769 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded "arch_specific_compiler_flags" to the build system
mspiegel [Mon, 29 Aug 2011 23:59:39 +0000 (23:59 +0000)]
Added "arch_specific_compiler_flags" to the build system

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1768 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMaking dimnames= argument explicit in JointFIMLRegressionTest.R
mspiegel [Mon, 29 Aug 2011 16:11:31 +0000 (16:11 +0000)]
Making dimnames= argument explicit in JointFIMLRegressionTest.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1767 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoPreparing build system for OS X 10.4 compatibility
mspiegel [Sun, 28 Aug 2011 20:17:18 +0000 (20:17 +0000)]
Preparing build system for OS X 10.4 compatibility

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1766 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdding argument 'threshnames' to R help for mxRAMObjective()
mspiegel [Mon, 22 Aug 2011 18:12:19 +0000 (18:12 +0000)]
Adding argument 'threshnames' to R help for mxRAMObjective()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1763 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoCleanup of user guide whitespace related.
mspiegel [Mon, 22 Aug 2011 18:05:22 +0000 (18:05 +0000)]
Cleanup of user guide whitespace related.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1762 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded chapters for ordinal, both path and matrix, again
restabrook [Mon, 22 Aug 2011 16:53:26 +0000 (16:53 +0000)]
Added chapters for ordinal, both path and matrix, again

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1761 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded chapters for ordinal, both path and matrix
restabrook [Mon, 22 Aug 2011 16:52:46 +0000 (16:52 +0000)]
Added chapters for ordinal, both path and matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1760 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoPerformance improvements for hollow models.
mspiegel [Mon, 22 Aug 2011 16:12:29 +0000 (16:12 +0000)]
Performance improvements for hollow models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1759 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoInitial support for Rmpi package in OpenMx 1.1 series
mspiegel [Sun, 21 Aug 2011 18:38:15 +0000 (18:38 +0000)]
Initial support for Rmpi package in OpenMx 1.1 series

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1758 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoInitial support for Rmpi package.
mspiegel [Sun, 21 Aug 2011 17:57:32 +0000 (17:57 +0000)]
Initial support for Rmpi package.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1757 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdding 'threshnames' argument for mxRAMObjective() function
mspiegel [Sat, 20 Aug 2011 14:34:20 +0000 (14:34 +0000)]
Adding 'threshnames' argument for mxRAMObjective() function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1756 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoNew objective@info slot that will store all additional information from optimizer.
mspiegel [Fri, 19 Aug 2011 16:08:23 +0000 (16:08 +0000)]
New objective@info slot that will store all additional information from optimizer.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1755 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRefactoring FIML to prepare for OpenMP implementation.
mspiegel [Fri, 19 Aug 2011 14:54:49 +0000 (14:54 +0000)]
Refactoring FIML to prepare for OpenMP implementation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1754 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdating CHANGES file to reflect bugfix to omxSetParameters()
mspiegel [Fri, 19 Aug 2011 12:52:51 +0000 (12:52 +0000)]
Updating CHANGES file to reflect bugfix to omxSetParameters()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1753 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdated changes to reflect mxAlgebra man page updates.
rgore [Thu, 18 Aug 2011 16:50:48 +0000 (16:50 +0000)]
Updated changes to reflect mxAlgebra man page updates.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1752 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agogit-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1750 df83fd30-4cca-4c36-ab9d...
rgore [Thu, 18 Aug 2011 16:47:34 +0000 (16:47 +0000)]
git-svn-id: openmx.psyc.virginia.edu/svn/trunk@1750 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoBug fix for omxSetParameters when lbound or ubound is NA
mspiegel [Thu, 18 Aug 2011 16:13:41 +0000 (16:13 +0000)]
Bug fix for omxSetParameters when lbound or ubound is NA

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1749 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoModifying sorted data representation in preparation for parallelization of FIML objec...
mspiegel [Tue, 16 Aug 2011 14:49:59 +0000 (14:49 +0000)]
Modifying sorted data representation in preparation for parallelization of FIML objective function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1748 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoCatching unknown matrix operator or function at mxAlgebra() or mxConstraint() declaration
mspiegel [Fri, 12 Aug 2011 22:41:19 +0000 (22:41 +0000)]
Catching unknown matrix operator or function at mxAlgebra() or mxConstraint() declaration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1747 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoBug fix for mxMatrix() and symmetric matrices.
mspiegel [Sat, 6 Aug 2011 18:35:19 +0000 (18:35 +0000)]
Bug fix for mxMatrix() and symmetric matrices.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1744 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdate the nightly tests using new mxPath() interface
mspiegel [Fri, 5 Aug 2011 17:28:50 +0000 (17:28 +0000)]
Update the nightly tests using new mxPath() interface

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1743 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdated CHANGES file to include documentation of the user guide updates reflecting...
rgore [Fri, 5 Aug 2011 12:08:37 +0000 (12:08 +0000)]
Updated CHANGES file to include documentation of the user guide updates reflecting the new 'connect' slot in mxPath.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1742 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdating Man pages and User Guide examples and documentation to reflect the new conne...
rgore [Fri, 5 Aug 2011 12:07:22 +0000 (12:07 +0000)]
Updating Man pages and User Guide examples and documentation to reflect the new connect slot in mxPath.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1741 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoBug fix in error detection for unknown thresholds.
mspiegel [Thu, 4 Aug 2011 17:24:27 +0000 (17:24 +0000)]
Bug fix in error detection for unknown thresholds.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1740 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRemove direct manipulation of model$objective@vector slot.
mspiegel [Thu, 4 Aug 2011 16:06:00 +0000 (16:06 +0000)]
Remove direct manipulation of model$objective@vector slot.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1739 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRemoving unused global variable declaration
mspiegel [Tue, 2 Aug 2011 15:44:00 +0000 (15:44 +0000)]
Removing unused global variable declaration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1738 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoExtracting SADMVN call into a separate wrapper function
mspiegel [Tue, 2 Aug 2011 15:33:55 +0000 (15:33 +0000)]
Extracting SADMVN call into a separate wrapper function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1737 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoBackporting the fix from r1734 into the 1.1 stable branch
mspiegel [Mon, 1 Aug 2011 20:25:34 +0000 (20:25 +0000)]
Backporting the fix from r1734 into the 1.1 stable branch

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1736 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSome code cleanup for the mxPath() 'connect' argument.
mspiegel [Mon, 1 Aug 2011 15:46:47 +0000 (15:46 +0000)]
Some code cleanup for the mxPath() 'connect' argument.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1735 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed a bug causing an infinite loop in some cases with non-positive-definite covaria...
tbrick [Mon, 1 Aug 2011 14:37:31 +0000 (14:37 +0000)]
Fixed a bug causing an infinite loop in some cases with non-positive-definite covariance matrices.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1734 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoupdated changes file to reflect 'connect' argument updates in mxPath function.
rgore [Sat, 30 Jul 2011 00:03:02 +0000 (00:03 +0000)]
updated changes file to reflect 'connect' argument updates in mxPath function.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1733 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoThe changes in MxRAMModel.R and MxPath.R reflect the new connect slot which replaces...
rgore [Fri, 29 Jul 2011 23:59:54 +0000 (23:59 +0000)]
The changes in MxRAMModel.R and MxPath.R reflect the new connect slot which replaces the deprecated all slot in MxPath. The remaining changes affect documentation and edits to test cases and demos replacing all with connect appropriately.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1732 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoTypo!
mspiegel [Fri, 29 Jul 2011 17:20:13 +0000 (17:20 +0000)]
Typo!

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1731 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoBegin labelling of read-only and write-only variables to prepare for multi-threaded...
mspiegel [Fri, 29 Jul 2011 17:19:27 +0000 (17:19 +0000)]
Begin labelling of read-only and write-only variables to prepare for multi-threaded FIML evaluation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1730 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded a test case on homogeneous-variance factor models with fake latents for PPML...
dhackett [Wed, 27 Jul 2011 13:59:21 +0000 (13:59 +0000)]
Added a test case on homogeneous-variance factor models with fake latents for PPML, fixed a related bug.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1729 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoTwo new test cases for PPML for models with non-homogeneous error variance: one for...
dhackett [Tue, 26 Jul 2011 19:18:57 +0000 (19:18 +0000)]
Two new test cases for PPML for models with non-homogeneous error variance: one for matrix specified models, and one for models with "fake latents".  Some bug fixes involving these cases.

imxTestPPML modified to check to make sure that the PPML transformation has actually occurred.  Also modified NHEV tests, which don't use imxTestPPML, to do the same tests.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1728 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRenaming some functions in the PPML transformation.
mspiegel [Tue, 26 Jul 2011 17:32:46 +0000 (17:32 +0000)]
Renaming some functions in the PPML transformation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1727 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUploading an (incomplete) set of tests that check that PPML-transformed models have...
dhackett [Tue, 26 Jul 2011 03:21:08 +0000 (03:21 +0000)]
Uploading an (incomplete) set of tests that check that PPML-transformed models have the same output as the untransformed models. Tests include a simple two-factor model with covariance data, linear growth curve models (modified from preexisting tests) specified in both path and matrix forms, a multilayered model with a latent predicting another latent, and 4 models with non-homogeneous error variance with both raw and covariance data.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1726 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSome bug fixes: filter for NHEV works correctly, omxRestoreResult no longer throws...
dhackett [Tue, 26 Jul 2011 02:39:00 +0000 (02:39 +0000)]
Some bug fixes: filter for NHEV works correctly, omxRestoreResult no longer throws an error when no variables have labels, and fakeLatents folding in to the symmetric matrix for NHEV is reimplemented.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1725 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded '@likelihoods' slot for MxFIMLObjective and MxRAMObjective (when using raw...
mspiegel [Mon, 25 Jul 2011 14:26:14 +0000 (14:26 +0000)]
Added '@likelihoods' slot for MxFIMLObjective and MxRAMObjective (when using raw data)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1724 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoEliminating temporary variables in "ModelRec" format
mspiegel [Mon, 25 Jul 2011 12:48:57 +0000 (12:48 +0000)]
Eliminating temporary variables in "ModelRec" format

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1723 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded recursive and piecemeal versions of LatentGrowthCurveModel_PathRaw.R
mhunter [Sat, 23 Jul 2011 22:15:13 +0000 (22:15 +0000)]
Added recursive and piecemeal versions of LatentGrowthCurveModel_PathRaw.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1722 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing bug in summary() on R objective functions.
mspiegel [Fri, 22 Jul 2011 15:13:50 +0000 (15:13 +0000)]
Fixing bug in summary() on R objective functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1721 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdating with developments on PPML implementation. Now supports:
dhackett [Fri, 22 Jul 2011 02:27:40 +0000 (02:27 +0000)]
Updating with developments on PPML implementation. Now supports:
Covariance data with or without means
(Some) models with latents predicting latents
Models with non-homogeneous error variance specified by a constant error covariance matrix with an error parameter factor
Also implemented is a reverse transform function to reinsert results from a PPML transformed model back in to the original model, works on all models that the PPML algorithm can currently transform

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1720 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded R Objective LISREL demo
mhunter [Thu, 21 Jul 2011 21:08:43 +0000 (21:08 +0000)]
Added R Objective LISREL demo

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1719 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoExtended imxDiff() to compare two lists according to their common named elements
mspiegel [Mon, 18 Jul 2011 17:56:34 +0000 (17:56 +0000)]
Extended imxDiff() to compare two lists according to their common named elements

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1718 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMissing MxDiff.R from Collate field.
mspiegel [Mon, 18 Jul 2011 14:50:20 +0000 (14:50 +0000)]
Missing MxDiff.R from Collate field.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1717 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoadding commented examples to mxOption, plus link to mxModel
tbates [Tue, 12 Jul 2011 13:39:33 +0000 (13:39 +0000)]
adding commented examples to mxOption, plus link to mxModel

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1716 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoInitial implementation of imxDiff() internal helper function
mspiegel [Mon, 11 Jul 2011 16:20:10 +0000 (16:20 +0000)]
Initial implementation of imxDiff() internal helper function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1715 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoadded working model to mxRun() help file. We should fix or remove the other non-runna...
tbates [Sun, 10 Jul 2011 21:26:55 +0000 (21:26 +0000)]
added working model to mxRun() help file. We should fix or remove the other non-runnable example: bad user experience

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1714 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoChanged signature of genericObjModelConvert() to improve performance
mspiegel [Sun, 10 Jul 2011 18:29:05 +0000 (18:29 +0000)]
Changed signature of genericObjModelConvert() to improve performance

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1713 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdding missing /cr
mspiegel [Thu, 7 Jul 2011 20:12:36 +0000 (20:12 +0000)]
Adding missing /cr

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1712 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded "Error Checking" toggle to mxOption()
mspiegel [Thu, 7 Jul 2011 20:07:34 +0000 (20:07 +0000)]
Added "Error Checking" toggle to mxOption()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1711 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoEliminated flattenModelHelper() and replaced with functions that use lapply.
mspiegel [Thu, 7 Jul 2011 14:49:42 +0000 (14:49 +0000)]
Eliminated flattenModelHelper() and replaced with functions that use lapply.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1710 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMore factoring of imxFlattenModel()
mspiegel [Thu, 7 Jul 2011 14:26:47 +0000 (14:26 +0000)]
More factoring of imxFlattenModel()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1709 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSome refactoring of imxFlattenModel(). Speed improvements are forthcoming.
mspiegel [Thu, 7 Jul 2011 13:31:11 +0000 (13:31 +0000)]
Some refactoring of imxFlattenModel().  Speed improvements are forthcoming.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1708 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoJust a little clean up of grammar and prose for clarity.
tbates [Tue, 5 Jul 2011 15:48:53 +0000 (15:48 +0000)]
Just a little clean up of grammar and prose for clarity.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1701 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoPropagating changes to ?mxPath from trunk to stable branches.
mspiegel [Tue, 5 Jul 2011 12:45:56 +0000 (12:45 +0000)]
Propagating changes to ?mxPath from trunk to stable branches.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1700 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoupdated examples - broke out unique bivariate (combn) and all (expand.grid), more...
tbates [Mon, 4 Jul 2011 21:37:25 +0000 (21:37 +0000)]
updated examples - broke out unique bivariate (combn) and all (expand.grid), more comments in  examples

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1699 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing small typos in mxPath() documentation
mspiegel [Sun, 3 Jul 2011 02:24:30 +0000 (02:24 +0000)]
Fixing small typos in mxPath() documentation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1698 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoput deprecated against all in parameter list
tbates [Sat, 2 Jul 2011 22:37:33 +0000 (22:37 +0000)]
put deprecated against all in parameter list

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1697 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoupdated with a note on why all is on its way out, more links, a note that combn might...
tbates [Sat, 2 Jul 2011 22:32:46 +0000 (22:32 +0000)]
updated with a note on why all is on its way out, more links, a note that combn might help

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1696 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded deprecation warning for 'all=TRUE' argument to mxPath()
mspiegel [Fri, 1 Jul 2011 16:05:06 +0000 (16:05 +0000)]
Added deprecation warning for 'all=TRUE' argument to mxPath()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1695 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoEliminating 'excludeself' argument from mxPath()
mspiegel [Fri, 1 Jul 2011 15:35:07 +0000 (15:35 +0000)]
Eliminating 'excludeself' argument from mxPath()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1694 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRenamed Row Objective FIML demo and added to Users Guide
mhunter [Fri, 1 Jul 2011 02:53:56 +0000 (02:53 +0000)]
Renamed Row Objective FIML demo and added to Users Guide

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1693 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoPreparing for 32-bit/64-bit windows compilations (maybe)
mspiegel [Thu, 30 Jun 2011 14:55:46 +0000 (14:55 +0000)]
Preparing for 32-bit/64-bit windows compilations (maybe)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1692 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoPrepare Makefile for 32-bit/64-bit windows compilations (maybe)
mspiegel [Thu, 30 Jun 2011 14:46:59 +0000 (14:46 +0000)]
Prepare Makefile for 32-bit/64-bit windows compilations (maybe)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1691 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing several typos caught by "make check"
mspiegel [Sun, 26 Jun 2011 15:43:47 +0000 (15:43 +0000)]
Fixing several typos caught by "make check"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1688 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdated docs and moved models from failing to passing
restabrook [Fri, 24 Jun 2011 20:51:29 +0000 (20:51 +0000)]
Updated docs and moved models from failing to passing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1687 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdating CITATION file
mspiegel [Fri, 24 Jun 2011 19:09:08 +0000 (19:09 +0000)]
Updating CITATION file

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1686 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed a bug in joint FIML that caused the objective value to be infinite.
tbrick [Fri, 17 Jun 2011 19:24:00 +0000 (19:24 +0000)]
Fixed a bug in joint FIML that caused the objective value to be infinite.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1685 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoCleaning up the writing in file checkpoint section of user guide.
mspiegel [Fri, 17 Jun 2011 18:52:27 +0000 (18:52 +0000)]
Cleaning up the writing in file checkpoint section of user guide.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1684 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed segmentation fault on backend error conditions
mspiegel [Fri, 17 Jun 2011 16:00:02 +0000 (16:00 +0000)]
Fixed segmentation fault on backend error conditions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1683 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded Row Objective demo
mhunter [Fri, 17 Jun 2011 12:29:09 +0000 (12:29 +0000)]
Added Row Objective demo

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1682 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdated to reflect new formatting and heading style for all demos.
rgore [Fri, 17 Jun 2011 02:29:38 +0000 (02:29 +0000)]
Updated to reflect new formatting and heading style for all demos.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1681 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdate demos directory to reflect new style header and new commenting style.
rgore [Fri, 17 Jun 2011 02:22:52 +0000 (02:22 +0000)]
Update demos directory to reflect new style header and new commenting style.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1680 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded error checking for dimnames on MxMatrix and MxAlgebra entities.
mspiegel [Wed, 15 Jun 2011 21:36:10 +0000 (21:36 +0000)]
Added error checking for dimnames on MxMatrix and MxAlgebra entities.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1679 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdated to reflect addition of verifyCorrelationMatrix to mxData.
rgore [Mon, 13 Jun 2011 21:45:04 +0000 (21:45 +0000)]
Updated to reflect addition of verifyCorrelationMatrix to mxData.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1678 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded test for verifyCorrelationMatrix.
rgore [Mon, 13 Jun 2011 21:41:40 +0000 (21:41 +0000)]
Added test for verifyCorrelationMatrix.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1677 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded verifyCorrelationMatrix to mxData. Which checks if a constructed correlation...
rgore [Mon, 13 Jun 2011 21:41:04 +0000 (21:41 +0000)]
Added verifyCorrelationMatrix to mxData. Which checks if a constructed correlation matrix is: (1) square, (2) has NA values, (3) symmetric, (4) positive-definite and (5) that every element on the matrix is diagonal.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1676 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing a bug introduced by previous patch to omxParallelCI()
mspiegel [Tue, 7 Jun 2011 15:55:31 +0000 (15:55 +0000)]
Fixing a bug introduced by previous patch to omxParallelCI()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1675 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded to FIML Row Objective Uers Guide files
mhunter [Fri, 3 Jun 2011 15:57:01 +0000 (15:57 +0000)]
Added to FIML Row Objective Uers Guide files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1674 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoReverting change to mxSummary() in order to maintain all numeric columns.
mspiegel [Fri, 3 Jun 2011 15:38:33 +0000 (15:38 +0000)]
Reverting change to mxSummary() in order to maintain all numeric columns.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1673 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1