openmx:openmx.git
8 years agoAdded license information to R source files.
mspiegel [Wed, 25 Mar 2009 22:02:34 +0000 (22:02 +0000)]
Added license information to R source files.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@294 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded license information to C header and source files.
mspiegel [Wed, 25 Mar 2009 21:58:35 +0000 (21:58 +0000)]
Added license information to C header and source files.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@293 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoRefactoring of mxModel extract and replace methods,
mspiegel [Thu, 19 Mar 2009 21:27:37 +0000 (21:27 +0000)]
Refactoring of mxModel extract and replace methods,
but not yet allowing '$' as an operator on models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@292 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded NOTICE and updated DESCRIPTION for Apache 2.0 compliance.
tbrick [Thu, 19 Mar 2009 20:41:40 +0000 (20:41 +0000)]
Added NOTICE and updated DESCRIPTION for Apache 2.0 compliance.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@291 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoChanged license file.
tbrick [Thu, 19 Mar 2009 20:32:33 +0000 (20:32 +0000)]
Changed license file.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@290 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded mxMatrix2.Rd
restabrook [Thu, 19 Mar 2009 19:16:04 +0000 (19:16 +0000)]
Added mxMatrix2.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@289 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoMinor bug fixes and first cut at reading definition vars.
tbrick [Thu, 19 Mar 2009 19:06:14 +0000 (19:06 +0000)]
Minor bug fixes and first cut at reading definition vars.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@288 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoFixed a serious error where vector elements were
mspiegel [Thu, 19 Mar 2009 16:11:15 +0000 (16:11 +0000)]
Fixed a serious error where vector elements were
not correctly loaded into a sparse matrix.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@287 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoForgot syntax for comments in old-Mx.
mspiegel [Thu, 19 Mar 2009 15:15:27 +0000 (15:15 +0000)]
Forgot syntax for comments in old-Mx.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@286 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoFixed a bug in defining symmetric matrices, when
mspiegel [Thu, 19 Mar 2009 14:15:13 +0000 (14:15 +0000)]
Fixed a bug in defining symmetric matrices, when
byrow = TRUE.  Also, checking in a failing test
on matrix inversion.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@285 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoTwo changes: (1) processing definition variables
mspiegel [Tue, 17 Mar 2009 18:57:55 +0000 (18:57 +0000)]
Two changes: (1) processing definition variables
on the front-end, and passing them back to the
back-end. (2) Added Apache License 2.0 file and
modified DESCRIPTION file with the license.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@284 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded "definitionVars" slot to MxFIMLObjective objects.
mspiegel [Tue, 17 Mar 2009 17:00:58 +0000 (17:00 +0000)]
Added "definitionVars" slot to MxFIMLObjective objects.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@283 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded more documentation, and changed mxFOO() functions such
mspiegel [Mon, 16 Mar 2009 18:50:09 +0000 (18:50 +0000)]
Added more documentation, and changed mxFOO() functions such
that unspecified default values are always signalled by NA
value in the interface.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@282 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoFixed configure script for os x.
mspiegel [Sat, 14 Mar 2009 04:15:50 +0000 (04:15 +0000)]
Fixed configure script for os x.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@281 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoChecking in a first working version of configure script.
mspiegel [Sat, 14 Mar 2009 04:14:15 +0000 (04:14 +0000)]
Checking in a first working version of configure script.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@280 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoReplacing src/Makevars with an autoconf
mspiegel [Fri, 13 Mar 2009 21:11:27 +0000 (21:11 +0000)]
Replacing src/Makevars with an autoconf
build system.  Currently not working,
you will need to manually modify Makevars.in.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@279 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoRemoving Rdoc from R.oo scheme.
mspiegel [Thu, 12 Mar 2009 21:37:14 +0000 (21:37 +0000)]
Removing Rdoc from R.oo scheme.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@278 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoCreated directories /models/passing, /models/failing,
mspiegel [Thu, 12 Mar 2009 21:36:37 +0000 (21:36 +0000)]
Created directories /models/passing, /models/failing,
/testsuite, and int/unit-tests.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@277 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoBacking out the noStart argument to sfInit(),
mspiegel [Thu, 12 Mar 2009 18:30:56 +0000 (18:30 +0000)]
Backing out the noStart argument to sfInit(),
it was making some warning messages during snowfall
initialization.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@276 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoFixed a few problems in back-end evaluation.
tbrick [Thu, 12 Mar 2009 18:17:45 +0000 (18:17 +0000)]
Fixed a few problems in back-end evaluation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@275 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoSmall changes to allow us to run a minimal model
mspiegel [Thu, 12 Mar 2009 15:46:43 +0000 (15:46 +0000)]
Small changes to allow us to run a minimal model
that contains no matrices, algebras, or objective functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@274 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded more documentation. Switched the order of arguments
mspiegel [Thu, 12 Mar 2009 14:54:44 +0000 (14:54 +0000)]
Added more documentation. Switched the order of arguments
to mxConstraint().  Removed NULL as a possible value from
MxData class union.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@273 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoEnabled validation checking of MxMatrices
mspiegel [Tue, 10 Mar 2009 03:55:39 +0000 (03:55 +0000)]
Enabled validation checking of MxMatrices
before running a job.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@272 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoBegan documentation for OpenMx package.
mspiegel [Tue, 3 Mar 2009 20:58:00 +0000 (20:58 +0000)]
Began documentation for OpenMx package.
mxAlgebra, mxMatrix, and mxModel functions have been
documented.  MxAlgebra, MxMatrix, and MxModel classes
have been documented.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@271 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agolinux 64bit gcc3_4 added
skenny [Mon, 2 Mar 2009 22:05:48 +0000 (22:05 +0000)]
linux 64bit gcc3_4 added

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@270 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agolib for gcc3_4 64bit
skenny [Mon, 2 Mar 2009 21:30:55 +0000 (21:30 +0000)]
lib for gcc3_4 64bit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@269 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAltered all mxFOO() functions so that 'name' argument
mspiegel [Mon, 2 Mar 2009 21:28:16 +0000 (21:28 +0000)]
Altered all mxFOO() functions so that 'name' argument
is always the last argument and it is optional.
Also modified the Makefile to include "make veryclean"
which deletes all files that end with ~.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@268 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded libnpsol.a for gcc3.9 and gcc4.1 on
mspiegel [Mon, 2 Mar 2009 00:10:02 +0000 (00:10 +0000)]
Added libnpsol.a for gcc3.9 and gcc4.1 on
32-bit linux architectures.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@267 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoA working version of npsol for 32-bit linux with
mspiegel [Sun, 1 Mar 2009 23:55:43 +0000 (23:55 +0000)]
A working version of npsol for 32-bit linux with
gcc 4.3, and some cleanup to the directory structure.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@266 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoupdated
skenny [Sun, 1 Mar 2009 22:51:07 +0000 (22:51 +0000)]
updated

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@265 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agocompiled with gcc 4_3_0
skenny [Sun, 1 Mar 2009 02:13:20 +0000 (02:13 +0000)]
compiled with gcc 4_3_0

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@264 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoFixed a bug with NaN's getting returned from the backend.
mspiegel [Fri, 27 Feb 2009 03:58:39 +0000 (03:58 +0000)]
Fixed a bug with NaN's getting returned from the backend.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@263 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded LGCDemo to testsuite directory.
mspiegel [Fri, 27 Feb 2009 03:45:57 +0000 (03:45 +0000)]
Added LGCDemo to testsuite directory.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@262 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoImplementing pretty printing of MxMatrix class.
mspiegel [Fri, 27 Feb 2009 03:42:11 +0000 (03:42 +0000)]
Implementing pretty printing of MxMatrix class.
Free variables are always printed with quotes.
The fixed parameter indicator '0' is always printed
without quotes. And sparse matrices are printed
with all of the zero elements (no quotes).

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@261 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdding directory testsuite.
mspiegel [Thu, 26 Feb 2009 22:15:32 +0000 (22:15 +0000)]
Adding directory testsuite.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@260 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoIntroduction of snowfall package to concurrently execute
mspiegel [Thu, 26 Feb 2009 18:27:11 +0000 (18:27 +0000)]
Introduction of snowfall package to concurrently execute
independent models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@259 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoturn off debugging output by default.
mspiegel [Thu, 26 Feb 2009 18:20:13 +0000 (18:20 +0000)]
turn off debugging output by default.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@258 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agorecompiled with gcc 4_1_1
skenny [Thu, 26 Feb 2009 17:22:41 +0000 (17:22 +0000)]
recompiled with gcc 4_1_1

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@257 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agocompiled on 32bit machcine
skenny [Tue, 24 Feb 2009 18:57:14 +0000 (18:57 +0000)]
compiled on 32bit machcine

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@256 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agolink to fortran libs
skenny [Tue, 24 Feb 2009 18:27:28 +0000 (18:27 +0000)]
link to fortran libs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@255 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agorecompiled for 32bit
skenny [Tue, 24 Feb 2009 18:16:29 +0000 (18:16 +0000)]
recompiled for 32bit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@254 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoNow checking the column names of data frames,
mspiegel [Tue, 24 Feb 2009 16:20:34 +0000 (16:20 +0000)]
Now checking the column names of data frames,
as a part of namespace checking for a model.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@253 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agodon't need
skenny [Tue, 24 Feb 2009 15:59:34 +0000 (15:59 +0000)]
don't need

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@252 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agodon't need
skenny [Tue, 24 Feb 2009 15:59:16 +0000 (15:59 +0000)]
don't need

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@251 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agodon't need
skenny [Tue, 24 Feb 2009 15:58:52 +0000 (15:58 +0000)]
don't need

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@250 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agodon't need c libs
skenny [Tue, 24 Feb 2009 15:57:09 +0000 (15:57 +0000)]
don't need c libs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@249 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agolibs compiled for 32bit
skenny [Tue, 24 Feb 2009 15:56:04 +0000 (15:56 +0000)]
libs compiled for 32bit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@248 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoalready a dir available
skenny [Tue, 24 Feb 2009 15:54:24 +0000 (15:54 +0000)]
already a dir available

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@247 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agolibs for 32bit arch
skenny [Tue, 24 Feb 2009 15:53:05 +0000 (15:53 +0000)]
libs for 32bit arch

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@246 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoFixed the datasets list argument to the backend function,
mspiegel [Tue, 24 Feb 2009 15:46:20 +0000 (15:46 +0000)]
Fixed the datasets list argument to the backend function,
such that duplicates of the same data are not passed twice.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@245 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoCreated an x86_64 and x86 directory for npsol binaries under linux.
mspiegel [Tue, 24 Feb 2009 02:11:35 +0000 (02:11 +0000)]
Created an x86_64 and x86 directory for npsol binaries under linux.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@244 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoRetrying that last merge. Should work, this time.
tbrick [Mon, 23 Feb 2009 19:35:16 +0000 (19:35 +0000)]
Retrying that last merge.  Should work, this time.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@243 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoMerge of trunk and experimental branch. Constraints and bounds now implemented....
tbrick [Mon, 23 Feb 2009 19:06:27 +0000 (19:06 +0000)]
Merge ... trunk and experimental branch.  Constraints and bounds now implemented.  Other minor fixes bugfixes in objective function evaluation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@242 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agofor compiling under linux
skenny [Mon, 23 Feb 2009 17:15:57 +0000 (17:15 +0000)]
for compiling under linux

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@238 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agolib for linix npsol
skenny [Mon, 23 Feb 2009 16:51:01 +0000 (16:51 +0000)]
lib for linix npsol

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@237 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoCorrected warning in omxConvertPathModel().
mspiegel [Thu, 19 Feb 2009 17:02:50 +0000 (17:02 +0000)]
Corrected warning in omxConvertPathModel().

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@226 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoMerging multi-objective branch back into the trunk.
mspiegel [Wed, 18 Feb 2009 21:24:16 +0000 (21:24 +0000)]
Merging multi-objective branch back into the trunk.
Multiple objective functions can be processed by
the optimizer.  Also added some error checking to
algebras.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@225 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoBetter comments for MxPathDemo.R
sboker [Wed, 18 Feb 2009 13:48:25 +0000 (13:48 +0000)]
Better comments for MxPathDemo.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@219 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoFixed comment in MxPathDemo.R
sboker [Wed, 18 Feb 2009 13:15:05 +0000 (13:15 +0000)]
Fixed comment in MxPathDemo.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@218 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoMinor changes: Hopefully stopped the creation of fort.7 files, stopped the output...
tbrick [Tue, 17 Feb 2009 20:21:12 +0000 (20:21 +0000)]
Minor changes: Hopefully stopped the creation of fort.7 files, stopped the output of a debugging call, and made a memory change that will be clobbered by objective objects soon.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@216 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoadded mxswift
skenny [Wed, 11 Feb 2009 21:23:08 +0000 (21:23 +0000)]
added mxswift

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@212 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agogetting started
skenny [Wed, 11 Feb 2009 20:22:43 +0000 (20:22 +0000)]
getting started

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@211 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agodir for generated models before optimization
skenny [Wed, 11 Feb 2009 20:19:05 +0000 (20:19 +0000)]
dir for generated models before optimization

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@210 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agodir for demo output
skenny [Wed, 11 Feb 2009 20:18:18 +0000 (20:18 +0000)]
dir for demo output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@209 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agodir where swift can find R processing scripts
skenny [Wed, 11 Feb 2009 17:50:44 +0000 (17:50 +0000)]
dir where swift can find R processing scripts

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@208 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoremoved reference to path on RANGER
skenny [Wed, 11 Feb 2009 17:40:50 +0000 (17:40 +0000)]
removed reference to path on RANGER

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@207 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agosimple wrapper for R that sets the environment before calling a given script
skenny [Wed, 11 Feb 2009 17:40:08 +0000 (17:40 +0000)]
simple wrapper for R that sets the environment before calling a given script

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@206 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agocatalog of apps that can be called by swift, this is currently specific to RANGER...
skenny [Wed, 11 Feb 2009 17:36:20 +0000 (17:36 +0000)]
catalog of apps that can be called by swift, this is currently specific to RANGER and points to an R wrapper on that site

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@205 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoa sites file for running on a localhost with multiple processors, required by swift
skenny [Wed, 11 Feb 2009 17:35:13 +0000 (17:35 +0000)]
a sites file for running on a localhost with multiple processors, required by swift

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@204 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoexecutes swift from within R
skenny [Wed, 11 Feb 2009 17:34:17 +0000 (17:34 +0000)]
executes swift from within R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@203 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoswift script reads a directory of models and processes them in parallel
skenny [Wed, 11 Feb 2009 17:33:29 +0000 (17:33 +0000)]
swift script reads a directory of models and processes them in parallel

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@202 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agooptimization of models done in parallel using swift from within R
skenny [Wed, 11 Feb 2009 17:32:20 +0000 (17:32 +0000)]
optimization of models done in parallel using swift from within R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@201 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agosystem call to swift from within R
skenny [Wed, 11 Feb 2009 17:14:32 +0000 (17:14 +0000)]
system call to swift from within R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@200 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoDeleted demos that are no longer valid.
mspiegel [Sun, 8 Feb 2009 18:59:47 +0000 (18:59 +0000)]
Deleted demos that are no longer valid.
Updated the names of the working demos.
Permitted NULL to be stored for a model's data.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@199 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoBackend now returns an empty list for algebra results
mspiegel [Thu, 5 Feb 2009 19:34:20 +0000 (19:34 +0000)]
Backend now returns an empty list for algebra results
when model contains zero algebras.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@198 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoImplemented model flattening. Removed the MxNullObjective.
mspiegel [Thu, 5 Feb 2009 19:23:36 +0000 (19:23 +0000)]
Implemented model flattening.  Removed the MxNullObjective.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@197 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded support for namespace checking (names must be unqiue
mspiegel [Thu, 5 Feb 2009 16:03:48 +0000 (16:03 +0000)]
Added support for namespace checking (names must be unqiue
within a namespace). Added support for sharing data with
independent submodels. Added support for freezing models.
Preparing for support for flattening models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@196 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoflags for linux compilation
skenny [Tue, 3 Feb 2009 17:25:41 +0000 (17:25 +0000)]
flags for linux compilation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@195 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoModify mxJobRun() to insert the final values of the free parameters
mspiegel [Sat, 31 Jan 2009 18:54:02 +0000 (18:54 +0000)]
Modify mxJobRun() to insert the final values of the free parameters
back into the matrices after a job is finished. (Algebras do not store
their final values yet). Updated printing methods for mxModels to
show path-style notation. Fixed bug in backend when # of free parameters
is 0. Used to return 1-length vector of NA, now returns 0-length vector.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@194 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded support for submodels, data, and objective functions
mspiegel [Sat, 31 Jan 2009 17:14:10 +0000 (17:14 +0000)]
Added support for submodels, data, and objective functions
to be stored in the MxModel object. Objective functions are
now named objects. Added an boolean flag to MxModel objects
that signals model dependence/independence. Submodels are
not properly executed yet (they are ignored).

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@193 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoC-only revision. Needs tuning and some renaming.
tbrick [Tue, 27 Jan 2009 18:16:33 +0000 (18:16 +0000)]
C-only revision.  Needs tuning and some renaming.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@192 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoUpdated the documentation of R functions that are analogs of the Mx functions.
mspiegel [Thu, 15 Jan 2009 22:49:18 +0000 (22:49 +0000)]
Updated the documentation of R functions that are analogs of the Mx functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@191 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoChange to omxAlgebraFunctions.cc commit
mneale [Thu, 15 Jan 2009 21:55:42 +0000 (21:55 +0000)]
Change to omxAlgebraFunctions.cc commit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@190 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoModifications to fix compile errors, apparently.
tbrick [Thu, 15 Jan 2009 20:36:22 +0000 (20:36 +0000)]
Modifications to fix compile errors, apparently.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@189 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agodoes not generate models with negatve deg of freedom or with 2-way symmetric connections
skenny [Wed, 7 Jan 2009 03:05:33 +0000 (03:05 +0000)]
does not generate models with negatve deg of freedom or with 2-way symmetric connections

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@188 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoTest version of algebras. Needs to be made neater. Algebras are working, but some...
tbrick [Sat, 3 Jan 2009 02:08:42 +0000 (02:08 +0000)]
Test version of algebras.  Needs to be made neater.  Algebras are working, but some operators are still untested.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@187 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoCorrected some mistakes in algebra passing from frontend to backend. Matrix numbers...
mspiegel [Sun, 21 Dec 2008 19:54:16 +0000 (19:54 +0000)]
Corrected some mistakes in algebra passing from frontend to backend.  Matrix numbers are -1 or less, algebra numbers are 0 or greater, and evaluating a singleton algebra or matrix expression requires a no-operation operator (designated 0) before the matrix or algebra.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@186 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoWrote omxConvertPathModel() that converts a path-style model to a model-style model.
mspiegel [Sun, 21 Dec 2008 18:51:08 +0000 (18:51 +0000)]
Wrote omxConvertPathModel() that converts a path-style model to a model-style model.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@185 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded mxJob interface.
mspiegel [Sun, 21 Dec 2008 17:20:08 +0000 (17:20 +0000)]
Added mxJob interface.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@184 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoNew version of npsol library for linux, still hangs on infinite loop.
mspiegel [Fri, 19 Dec 2008 17:42:45 +0000 (17:42 +0000)]
New version of npsol library for linux, still hangs on infinite loop.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@183 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoRemoved an nrow=3, ncol=3 specification from a matrix in order to eliminate a warning...
mspiegel [Thu, 18 Dec 2008 22:02:09 +0000 (22:02 +0000)]
Removed an nrow=3, ncol=3 specification from a matrix in order to eliminate a warning message.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@182 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoObjective functions now accept either an algebra name or a matrix name for their...
mspiegel [Thu, 18 Dec 2008 21:58:56 +0000 (21:58 +0000)]
Objective functions now accept either an algebra name or a matrix name for their parameters.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@181 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoBugfix: both demos should work now.
tbrick [Thu, 18 Dec 2008 19:46:18 +0000 (19:46 +0000)]
Bugfix: both demos should work now.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@180 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoChanges to passing convention of MxObjectiveFunctions, and trickling these changes...
mspiegel [Thu, 18 Dec 2008 19:06:48 +0000 (19:06 +0000)]
Changes to passing convention of MxObjectiveFunctions, and trickling these changes to the backend.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@179 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAlterations to demos and objective function types for ease of use. MxRAMObjective...
tbrick [Thu, 18 Dec 2008 02:54:26 +0000 (02:54 +0000)]
Alterations to demos and objective function types for ease of use.  MxRAMObjective temporarily tweaked. SimpleCovarianceS4 and SimpleFIMLS4 demos should now work.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@178 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

8 years agoAdded linux binary of libnpsol, and changed Makevars to reflect directory structure.
mspiegel [Wed, 17 Dec 2008 17:56:41 +0000 (17:56 +0000)]
Added linux binary of libnpsol, and changed Makevars to reflect directory structure.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@177 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

9 years agoRemoved npsolWrap.c in favor of npsolWrap.cc
tbrick [Tue, 9 Dec 2008 15:51:23 +0000 (15:51 +0000)]
Removed npsolWrap.c in favor of npsolWrap.cc

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@176 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

9 years agoForgot to check these in.
tbrick [Tue, 9 Dec 2008 15:01:08 +0000 (15:01 +0000)]
Forgot to check these in.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@175 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

9 years agoTRB: Added core files and S4 demo files. FIML and Covariance now working in backend...
tbrick [Tue, 9 Dec 2008 14:06:29 +0000 (14:06 +0000)]
TRB: Added core files and S4 demo files.  FIML and Covariance now working in backend; algebras not.  Backend mostly shifted to C++.  Much cleaning still required.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@174 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

9 years agoTRB: Updated C/C++ core: FIML and Covariance optimization now working (testing needed).
tbrick [Tue, 9 Dec 2008 14:03:23 +0000 (14:03 +0000)]
TRB: Updated C/C++ core: FIML and Covariance optimization now working (testing needed).

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@173 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1