openmx:openmx.git
6 years agoMore changes to parallel FIML.
mspiegel [Thu, 3 Nov 2011 13:45:03 +0000 (13:45 +0000)]
More changes to parallel FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1835 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMore implementation on parallel FIML.
mspiegel [Wed, 2 Nov 2011 21:01:47 +0000 (21:01 +0000)]
More implementation on parallel FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1834 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoStarting to work on FIML parallelism, disabling parallelism by default.
mspiegel [Wed, 2 Nov 2011 20:17:52 +0000 (20:17 +0000)]
Starting to work on FIML parallelism, disabling parallelism by default.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1833 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoPreparing for OpenMP enabled FIML calculations
mspiegel [Wed, 2 Nov 2011 15:57:52 +0000 (15:57 +0000)]
Preparing for OpenMP enabled FIML calculations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1832 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoA better solution to the "C stack usage is too close to the limit" problem, whereby...
mspiegel [Wed, 2 Nov 2011 15:17:42 +0000 (15:17 +0000)]
A better solution to the "C stack usage is too close to the limit" problem, whereby R objective functions and FIML objective function with ordinal data automatically force sequential computation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1831 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoDisable stack checking until a more amenable solution is found.
mspiegel [Wed, 2 Nov 2011 14:47:32 +0000 (14:47 +0000)]
Disable stack checking until a more amenable solution is found.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1830 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agobug fixes to mxOption() and illegal reference detection in mxMatrix()
mspiegel [Tue, 1 Nov 2011 15:25:34 +0000 (15:25 +0000)]
bug fixes to mxOption() and illegal reference detection in mxMatrix()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1829 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoDefensive programming for setting "Number of Cores"
mspiegel [Mon, 31 Oct 2011 15:11:53 +0000 (15:11 +0000)]
Defensive programming for setting "Number of Cores"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1828 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMultiple threads are now enabled by default.
mspiegel [Mon, 31 Oct 2011 15:06:05 +0000 (15:06 +0000)]
Multiple threads are now enabled by default.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1827 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding upper and lower bound to test case.
mspiegel [Sun, 30 Oct 2011 18:49:53 +0000 (18:49 +0000)]
Adding upper and lower bound to test case.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1826 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agochanging numerical tolerance from 0.001 to 0.002.
mspiegel [Sun, 30 Oct 2011 18:40:50 +0000 (18:40 +0000)]
changing numerical tolerance from 0.001 to 0.002.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1825 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMore bugfixes to thread-level parallelism
mspiegel [Fri, 28 Oct 2011 20:05:43 +0000 (20:05 +0000)]
More bugfixes to thread-level parallelism

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1824 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoClarifying error message for mxOption()
mspiegel [Fri, 28 Oct 2011 14:37:25 +0000 (14:37 +0000)]
Clarifying error message for mxOption()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1823 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial working version of multicore parallelism.
mspiegel [Wed, 26 Oct 2011 18:16:13 +0000 (18:16 +0000)]
Initial working version of multicore parallelism.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1822 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFix a bug I introduced while refactoring omxLookupDuplicateElement()
mspiegel [Wed, 26 Oct 2011 15:48:42 +0000 (15:48 +0000)]
Fix a bug I introduced while refactoring omxLookupDuplicateElement()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1821 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoshared memory parallelism cleanup
mspiegel [Tue, 25 Oct 2011 20:18:33 +0000 (20:18 +0000)]
shared memory parallelism cleanup

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1820 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCommitting fixes to multicore execution. Added argument 'copyState' to omxCopyMatrix...
mspiegel [Tue, 25 Oct 2011 17:49:23 +0000 (17:49 +0000)]
Committing fixes to multicore execution. Added argument 'copyState' to omxCopyMatrix() function.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1819 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCopying libnpsol.a to gcc4.5 and gcc4.6 directories for 32-bit x86
mspiegel [Sun, 23 Oct 2011 05:37:17 +0000 (05:37 +0000)]
Copying libnpsol.a to gcc4.5 and gcc4.6 directories for 32-bit x86

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1816 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoReplaced "inline" with OMXINLINE macro that can be removed for debugging
mspiegel [Fri, 21 Oct 2011 14:47:46 +0000 (14:47 +0000)]
Replaced "inline" with OMXINLINE macro that can be removed for debugging

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1815 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial commit of omxDetectCores() function, a backport of detectCores() available...
mspiegel [Thu, 20 Oct 2011 13:14:41 +0000 (13:14 +0000)]
Initial commit of omxDetectCores() function, a backport of detectCores() available in the package "parallel" in R 2.14.0

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1814 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding hasMatrixNumber and matrixNumber fields to omxMatrix object for state duplication.
mspiegel [Thu, 20 Oct 2011 12:55:07 +0000 (12:55 +0000)]
Adding hasMatrixNumber and matrixNumber fields to omxMatrix object for state duplication.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1813 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoving unused variables that have been detected by gcc.
mspiegel [Wed, 19 Oct 2011 13:45:52 +0000 (13:45 +0000)]
Removing unused variables that have been detected by gcc.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1812 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoved SetFinalReturnsRAMObjective, because it is no longer called.
tbrick [Fri, 14 Oct 2011 14:52:42 +0000 (14:52 +0000)]
Removed SetFinalReturnsRAMObjective, because it is no longer called.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1809 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBackporting fix to summary() function to OpenMx 1.1
mspiegel [Fri, 14 Oct 2011 14:17:54 +0000 (14:17 +0000)]
Backporting fix to summary() function to OpenMx 1.1

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1807 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixed a bug in the calculation of Independence likelihoods. And sped up the computat...
tbrick [Fri, 14 Oct 2011 14:12:50 +0000 (14:12 +0000)]
Fixed a bug in the calculation of Independence likelihoods.  And sped up the computation, to boot.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1806 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBug fixes to state duplication
mspiegel [Mon, 10 Oct 2011 21:02:44 +0000 (21:02 +0000)]
Bug fixes to state duplication

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1805 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded several omx-version BLAS functions to better encapsulate omxMatrix class. ...
tbrick [Mon, 10 Oct 2011 16:34:00 +0000 (16:34 +0000)]
Added several omx-version BLAS functions to better encapsulate omxMatrix class.  Also altered the API for objective function duplication to fix an error in parallel hessian calculation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1804 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoseeAlso link in mxEval.Rd
tbates [Sun, 9 Oct 2011 19:50:09 +0000 (19:50 +0000)]
seeAlso link in mxEval.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1803 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agofixed typo in plot demo for twinData.Rd
tbates [Sun, 9 Oct 2011 17:19:31 +0000 (17:19 +0000)]
fixed typo in plot demo for twinData.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1802 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded preliminary Rd file documenting twinData
tbates [Sun, 9 Oct 2011 17:13:29 +0000 (17:13 +0000)]
Added preliminary Rd file documenting twinData
Needs a reference and more info on units and processing of the data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1801 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBugfixes in omxState.c
mspiegel [Fri, 7 Oct 2011 18:10:49 +0000 (18:10 +0000)]
Bugfixes in omxState.c

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1800 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoChanges necessary to get "Number of Cores" option to do anything (namely crash OpenMx)
mspiegel [Fri, 7 Oct 2011 17:48:42 +0000 (17:48 +0000)]
Changes necessary to get "Number of Cores" option to do anything (namely crash OpenMx)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1799 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded omxState duplication process.
tbrick [Thu, 6 Oct 2011 12:52:57 +0000 (12:52 +0000)]
Added omxState duplication process.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1798 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixed bug in mxSummary
restabrook [Tue, 4 Oct 2011 14:58:36 +0000 (14:58 +0000)]
Fixed bug in mxSummary

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1797 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNow checking for OpenMP support in build system, to ignore Mac OpenMP library issues.
mspiegel [Fri, 30 Sep 2011 21:02:43 +0000 (21:02 +0000)]
Now checking for OpenMP support in build system, to ignore Mac OpenMP library issues.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1796 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoSeparating the diagonal and off-diagonal calculations in Hessian calculation.
mspiegel [Fri, 23 Sep 2011 19:17:38 +0000 (19:17 +0000)]
Separating the diagonal and off-diagonal calculations in Hessian calculation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1795 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial support for OpenMP in Hessian calculation
mspiegel [Fri, 23 Sep 2011 17:31:15 +0000 (17:31 +0000)]
Initial support for OpenMP in Hessian calculation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1794 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded LISREL Objective Frontend
mhunter [Fri, 23 Sep 2011 14:20:50 +0000 (14:20 +0000)]
Added LISREL Objective Frontend

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1793 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFirst swipe at State duplication for parallelism. Also some changes to subobjective...
tbrick [Thu, 22 Sep 2011 15:33:13 +0000 (15:33 +0000)]
First swipe at State duplication for parallelism.  Also some changes to subobjective functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1792 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoving references to "constructor" in error messages.
mspiegel [Mon, 19 Sep 2011 14:14:14 +0000 (14:14 +0000)]
Removing references to "constructor" in error messages.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1791 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded more detailed information to mxMatrix warnings and errors. The new info will...
rgore [Mon, 19 Sep 2011 13:36:19 +0000 (13:36 +0000)]
Added more detailed information to mxMatrix warnings and errors. The new info will specify the exact call to mxMatrix that caused the warning or error. Also added omxCheckWarning, which behaves just like omxCheckError but for warning messages.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1790 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoReplacing sys.call() with imxLocateFunction()
mspiegel [Wed, 14 Sep 2011 14:32:35 +0000 (14:32 +0000)]
Replacing sys.call() with imxLocateFunction()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1788 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCopying libnpsol.a from gcc4.5 into gcc4.6 directory
mspiegel [Wed, 14 Sep 2011 13:31:34 +0000 (13:31 +0000)]
Copying libnpsol.a from gcc4.5 into gcc4.6 directory

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1787 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoPropagated determinant calculation changes to FIML.
tbrick [Wed, 14 Sep 2011 12:04:55 +0000 (12:04 +0000)]
Propagated determinant calculation changes to FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1786 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixing callMethods[] array in backend
mspiegel [Fri, 9 Sep 2011 15:45:53 +0000 (15:45 +0000)]
Fixing callMethods[] array in backend

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1782 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoTimo's log det improvement
restabrook [Fri, 9 Sep 2011 14:25:32 +0000 (14:25 +0000)]
Timo's log det improvement

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1781 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixed joint ordinal-continuous bug if thresholds are result of mxAlgebra
mneale [Wed, 7 Sep 2011 13:56:28 +0000 (13:56 +0000)]
Fixed joint ordinal-continuous bug if thresholds are result of mxAlgebra

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1779 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding "Number of Cores" options to mxOptions()
mspiegel [Wed, 7 Sep 2011 13:29:44 +0000 (13:29 +0000)]
Adding "Number of Cores" options to mxOptions()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1778 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoved sQuote{digits} (which gives smart quotes)
tbates [Sun, 4 Sep 2011 15:50:01 +0000 (15:50 +0000)]
Removed sQuote{digits} (which gives smart quotes)
Regularized space around equal and after comma
Added example of using options to set sig digits
added link to options(mxOptions)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1777 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixing joint ordinal-continuous bug when extra columns appear in dataset.
mspiegel [Fri, 2 Sep 2011 17:48:40 +0000 (17:48 +0000)]
Fixing joint ordinal-continuous bug when extra columns appear in dataset.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1775 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFirst version of modified RAM subobjective structure.
tbrick [Fri, 2 Sep 2011 08:11:29 +0000 (08:11 +0000)]
First version of modified RAM subobjective structure.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1773 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCommitting skeleton for PPML transformation in backend.
mspiegel [Thu, 1 Sep 2011 15:27:55 +0000 (15:27 +0000)]
Committing skeleton for PPML transformation in backend.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1772 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoSome cleanup to the User Guide.
mspiegel [Wed, 31 Aug 2011 18:55:58 +0000 (18:55 +0000)]
Some cleanup to the User Guide.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1771 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdated ordinal docs
restabrook [Wed, 31 Aug 2011 16:23:58 +0000 (16:23 +0000)]
Updated ordinal docs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1770 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded flag, -mmacosx-version-min=10.4 ,to ensure backwards compatability for Mac...
rgore [Tue, 30 Aug 2011 16:15:32 +0000 (16:15 +0000)]
Added flag, -mmacosx-version-min=10.4 ,to ensure backwards compatability for Mac OS 10.4 and 10.5.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1769 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded "arch_specific_compiler_flags" to the build system
mspiegel [Mon, 29 Aug 2011 23:59:39 +0000 (23:59 +0000)]
Added "arch_specific_compiler_flags" to the build system

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1768 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMaking dimnames= argument explicit in JointFIMLRegressionTest.R
mspiegel [Mon, 29 Aug 2011 16:11:31 +0000 (16:11 +0000)]
Making dimnames= argument explicit in JointFIMLRegressionTest.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1767 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoPreparing build system for OS X 10.4 compatibility
mspiegel [Sun, 28 Aug 2011 20:17:18 +0000 (20:17 +0000)]
Preparing build system for OS X 10.4 compatibility

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1766 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding argument 'threshnames' to R help for mxRAMObjective()
mspiegel [Mon, 22 Aug 2011 18:12:19 +0000 (18:12 +0000)]
Adding argument 'threshnames' to R help for mxRAMObjective()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1763 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCleanup of user guide whitespace related.
mspiegel [Mon, 22 Aug 2011 18:05:22 +0000 (18:05 +0000)]
Cleanup of user guide whitespace related.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1762 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded chapters for ordinal, both path and matrix, again
restabrook [Mon, 22 Aug 2011 16:53:26 +0000 (16:53 +0000)]
Added chapters for ordinal, both path and matrix, again

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1761 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded chapters for ordinal, both path and matrix
restabrook [Mon, 22 Aug 2011 16:52:46 +0000 (16:52 +0000)]
Added chapters for ordinal, both path and matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1760 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoPerformance improvements for hollow models.
mspiegel [Mon, 22 Aug 2011 16:12:29 +0000 (16:12 +0000)]
Performance improvements for hollow models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1759 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial support for Rmpi package in OpenMx 1.1 series
mspiegel [Sun, 21 Aug 2011 18:38:15 +0000 (18:38 +0000)]
Initial support for Rmpi package in OpenMx 1.1 series

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1758 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial support for Rmpi package.
mspiegel [Sun, 21 Aug 2011 17:57:32 +0000 (17:57 +0000)]
Initial support for Rmpi package.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1757 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding 'threshnames' argument for mxRAMObjective() function
mspiegel [Sat, 20 Aug 2011 14:34:20 +0000 (14:34 +0000)]
Adding 'threshnames' argument for mxRAMObjective() function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1756 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNew objective@info slot that will store all additional information from optimizer.
mspiegel [Fri, 19 Aug 2011 16:08:23 +0000 (16:08 +0000)]
New objective@info slot that will store all additional information from optimizer.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1755 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRefactoring FIML to prepare for OpenMP implementation.
mspiegel [Fri, 19 Aug 2011 14:54:49 +0000 (14:54 +0000)]
Refactoring FIML to prepare for OpenMP implementation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1754 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdating CHANGES file to reflect bugfix to omxSetParameters()
mspiegel [Fri, 19 Aug 2011 12:52:51 +0000 (12:52 +0000)]
Updating CHANGES file to reflect bugfix to omxSetParameters()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1753 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdated changes to reflect mxAlgebra man page updates.
rgore [Thu, 18 Aug 2011 16:50:48 +0000 (16:50 +0000)]
Updated changes to reflect mxAlgebra man page updates.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1752 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agogit-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1750 df83fd30-4cca-4c36-ab9d...
rgore [Thu, 18 Aug 2011 16:47:34 +0000 (16:47 +0000)]
git-svn-id: openmx.psyc.virginia.edu/svn/trunk@1750 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBug fix for omxSetParameters when lbound or ubound is NA
mspiegel [Thu, 18 Aug 2011 16:13:41 +0000 (16:13 +0000)]
Bug fix for omxSetParameters when lbound or ubound is NA

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1749 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoModifying sorted data representation in preparation for parallelization of FIML objec...
mspiegel [Tue, 16 Aug 2011 14:49:59 +0000 (14:49 +0000)]
Modifying sorted data representation in preparation for parallelization of FIML objective function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1748 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCatching unknown matrix operator or function at mxAlgebra() or mxConstraint() declaration
mspiegel [Fri, 12 Aug 2011 22:41:19 +0000 (22:41 +0000)]
Catching unknown matrix operator or function at mxAlgebra() or mxConstraint() declaration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1747 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBug fix for mxMatrix() and symmetric matrices.
mspiegel [Sat, 6 Aug 2011 18:35:19 +0000 (18:35 +0000)]
Bug fix for mxMatrix() and symmetric matrices.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1744 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdate the nightly tests using new mxPath() interface
mspiegel [Fri, 5 Aug 2011 17:28:50 +0000 (17:28 +0000)]
Update the nightly tests using new mxPath() interface

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1743 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdated CHANGES file to include documentation of the user guide updates reflecting...
rgore [Fri, 5 Aug 2011 12:08:37 +0000 (12:08 +0000)]
Updated CHANGES file to include documentation of the user guide updates reflecting the new 'connect' slot in mxPath.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1742 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdating Man pages and User Guide examples and documentation to reflect the new conne...
rgore [Fri, 5 Aug 2011 12:07:22 +0000 (12:07 +0000)]
Updating Man pages and User Guide examples and documentation to reflect the new connect slot in mxPath.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1741 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBug fix in error detection for unknown thresholds.
mspiegel [Thu, 4 Aug 2011 17:24:27 +0000 (17:24 +0000)]
Bug fix in error detection for unknown thresholds.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1740 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemove direct manipulation of model$objective@vector slot.
mspiegel [Thu, 4 Aug 2011 16:06:00 +0000 (16:06 +0000)]
Remove direct manipulation of model$objective@vector slot.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1739 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoving unused global variable declaration
mspiegel [Tue, 2 Aug 2011 15:44:00 +0000 (15:44 +0000)]
Removing unused global variable declaration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1738 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoExtracting SADMVN call into a separate wrapper function
mspiegel [Tue, 2 Aug 2011 15:33:55 +0000 (15:33 +0000)]
Extracting SADMVN call into a separate wrapper function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1737 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBackporting the fix from r1734 into the 1.1 stable branch
mspiegel [Mon, 1 Aug 2011 20:25:34 +0000 (20:25 +0000)]
Backporting the fix from r1734 into the 1.1 stable branch

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1736 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoSome code cleanup for the mxPath() 'connect' argument.
mspiegel [Mon, 1 Aug 2011 15:46:47 +0000 (15:46 +0000)]
Some code cleanup for the mxPath() 'connect' argument.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1735 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixed a bug causing an infinite loop in some cases with non-positive-definite covaria...
tbrick [Mon, 1 Aug 2011 14:37:31 +0000 (14:37 +0000)]
Fixed a bug causing an infinite loop in some cases with non-positive-definite covariance matrices.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1734 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoupdated changes file to reflect 'connect' argument updates in mxPath function.
rgore [Sat, 30 Jul 2011 00:03:02 +0000 (00:03 +0000)]
updated changes file to reflect 'connect' argument updates in mxPath function.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1733 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoThe changes in MxRAMModel.R and MxPath.R reflect the new connect slot which replaces...
rgore [Fri, 29 Jul 2011 23:59:54 +0000 (23:59 +0000)]
The changes in MxRAMModel.R and MxPath.R reflect the new connect slot which replaces the deprecated all slot in MxPath. The remaining changes affect documentation and edits to test cases and demos replacing all with connect appropriately.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1732 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoTypo!
mspiegel [Fri, 29 Jul 2011 17:20:13 +0000 (17:20 +0000)]
Typo!

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1731 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBegin labelling of read-only and write-only variables to prepare for multi-threaded...
mspiegel [Fri, 29 Jul 2011 17:19:27 +0000 (17:19 +0000)]
Begin labelling of read-only and write-only variables to prepare for multi-threaded FIML evaluation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1730 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded a test case on homogeneous-variance factor models with fake latents for PPML...
dhackett [Wed, 27 Jul 2011 13:59:21 +0000 (13:59 +0000)]
Added a test case on homogeneous-variance factor models with fake latents for PPML, fixed a related bug.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1729 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoTwo new test cases for PPML for models with non-homogeneous error variance: one for...
dhackett [Tue, 26 Jul 2011 19:18:57 +0000 (19:18 +0000)]
Two new test cases for PPML for models with non-homogeneous error variance: one for matrix specified models, and one for models with "fake latents".  Some bug fixes involving these cases.

imxTestPPML modified to check to make sure that the PPML transformation has actually occurred.  Also modified NHEV tests, which don't use imxTestPPML, to do the same tests.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1728 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRenaming some functions in the PPML transformation.
mspiegel [Tue, 26 Jul 2011 17:32:46 +0000 (17:32 +0000)]
Renaming some functions in the PPML transformation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1727 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUploading an (incomplete) set of tests that check that PPML-transformed models have...
dhackett [Tue, 26 Jul 2011 03:21:08 +0000 (03:21 +0000)]
Uploading an (incomplete) set of tests that check that PPML-transformed models have the same output as the untransformed models. Tests include a simple two-factor model with covariance data, linear growth curve models (modified from preexisting tests) specified in both path and matrix forms, a multilayered model with a latent predicting another latent, and 4 models with non-homogeneous error variance with both raw and covariance data.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1726 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoSome bug fixes: filter for NHEV works correctly, omxRestoreResult no longer throws...
dhackett [Tue, 26 Jul 2011 02:39:00 +0000 (02:39 +0000)]
Some bug fixes: filter for NHEV works correctly, omxRestoreResult no longer throws an error when no variables have labels, and fakeLatents folding in to the symmetric matrix for NHEV is reimplemented.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1725 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded '@likelihoods' slot for MxFIMLObjective and MxRAMObjective (when using raw...
mspiegel [Mon, 25 Jul 2011 14:26:14 +0000 (14:26 +0000)]
Added '@likelihoods' slot for MxFIMLObjective and MxRAMObjective (when using raw data)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1724 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoEliminating temporary variables in "ModelRec" format
mspiegel [Mon, 25 Jul 2011 12:48:57 +0000 (12:48 +0000)]
Eliminating temporary variables in "ModelRec" format

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1723 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded recursive and piecemeal versions of LatentGrowthCurveModel_PathRaw.R
mhunter [Sat, 23 Jul 2011 22:15:13 +0000 (22:15 +0000)]
Added recursive and piecemeal versions of LatentGrowthCurveModel_PathRaw.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1722 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixing bug in summary() on R objective functions.
mspiegel [Fri, 22 Jul 2011 15:13:50 +0000 (15:13 +0000)]
Fixing bug in summary() on R objective functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1721 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdating with developments on PPML implementation. Now supports:
dhackett [Fri, 22 Jul 2011 02:27:40 +0000 (02:27 +0000)]
Updating with developments on PPML implementation. Now supports:
Covariance data with or without means
(Some) models with latents predicting latents
Models with non-homogeneous error variance specified by a constant error covariance matrix with an error parameter factor
Also implemented is a reverse transform function to reinsert results from a PPML transformed model back in to the original model, works on all models that the PPML algorithm can currently transform

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1720 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded R Objective LISREL demo
mhunter [Thu, 21 Jul 2011 21:08:43 +0000 (21:08 +0000)]
Added R Objective LISREL demo

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1719 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1