openmx:openmx.git
6 years agoParallel FIML passes all tests in the test suite.
mspiegel [Tue, 8 Nov 2011 21:44:03 +0000 (21:44 +0000)]
Parallel FIML passes all tests in the test suite.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1852 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoSequential performance improvements.
mspiegel [Tue, 8 Nov 2011 20:41:51 +0000 (20:41 +0000)]
Sequential performance improvements.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1851 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNow 1 error remaining in test suite for parallel FIML
mspiegel [Tue, 8 Nov 2011 20:07:54 +0000 (20:07 +0000)]
Now 1 error remaining in test suite for parallel FIML

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1850 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNow 6 failing tests in parallel FIML evaluation.
mspiegel [Tue, 8 Nov 2011 18:36:16 +0000 (18:36 +0000)]
Now 6 failing tests in parallel FIML evaluation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1849 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNow 10 failing test cases in parallel FIML.
mspiegel [Tue, 8 Nov 2011 16:59:06 +0000 (16:59 +0000)]
Now 10 failing test cases in parallel FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1848 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNecessary file forgot to check in changes.
mspiegel [Tue, 8 Nov 2011 14:47:51 +0000 (14:47 +0000)]
Necessary file forgot to check in changes.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1847 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoWork on FIML parallelism.
mspiegel [Tue, 8 Nov 2011 14:47:28 +0000 (14:47 +0000)]
Work on FIML parallelism.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1846 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNow only 22 failing tests with FIML parallel enabled.
mspiegel [Mon, 7 Nov 2011 21:52:49 +0000 (21:52 +0000)]
Now only 22 failing tests with FIML parallel enabled.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1845 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNever ever put hidden state inside a C pre-processor declaration.
mspiegel [Mon, 7 Nov 2011 21:08:29 +0000 (21:08 +0000)]
Never ever put hidden state inside a C pre-processor declaration.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1844 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMore debugging of FIML parallel
mspiegel [Mon, 7 Nov 2011 20:02:55 +0000 (20:02 +0000)]
More debugging of FIML parallel

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1843 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoadded mike's explanation of the computational cost of an mxConstraint over a labelled...
tbates [Sun, 6 Nov 2011 16:42:54 +0000 (16:42 +0000)]
added mike's explanation of the computational cost of an mxConstraint over a labelled equate
to the help.

Also clarified the text and examples a bit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1842 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBasic outline for updating mxState in FIML calculations (not working)
mspiegel [Fri, 4 Nov 2011 00:20:12 +0000 (00:20 +0000)]
Basic outline for updating mxState in FIML calculations (not working)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1841 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoEliminating dynamic matrices implementation
mspiegel [Thu, 3 Nov 2011 23:32:27 +0000 (23:32 +0000)]
Eliminating dynamic matrices implementation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1840 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAttempting to propagate major and minor iteration numbers.
mspiegel [Thu, 3 Nov 2011 20:51:50 +0000 (20:51 +0000)]
Attempting to propagate major and minor iteration numbers.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1839 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCorrections to state duplication.
mspiegel [Thu, 3 Nov 2011 19:17:05 +0000 (19:17 +0000)]
Corrections to state duplication.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1838 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoIntroducing the list of matrices created by the backend as a field of omxState
mspiegel [Thu, 3 Nov 2011 15:29:00 +0000 (15:29 +0000)]
Introducing the list of matrices created by the backend as a field of omxState

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1837 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMore updates in preparation to parallel FIML calculation.
mspiegel [Thu, 3 Nov 2011 14:55:58 +0000 (14:55 +0000)]
More updates in preparation to parallel FIML calculation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1836 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMore changes to parallel FIML.
mspiegel [Thu, 3 Nov 2011 13:45:03 +0000 (13:45 +0000)]
More changes to parallel FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1835 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMore implementation on parallel FIML.
mspiegel [Wed, 2 Nov 2011 21:01:47 +0000 (21:01 +0000)]
More implementation on parallel FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1834 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoStarting to work on FIML parallelism, disabling parallelism by default.
mspiegel [Wed, 2 Nov 2011 20:17:52 +0000 (20:17 +0000)]
Starting to work on FIML parallelism, disabling parallelism by default.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1833 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoPreparing for OpenMP enabled FIML calculations
mspiegel [Wed, 2 Nov 2011 15:57:52 +0000 (15:57 +0000)]
Preparing for OpenMP enabled FIML calculations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1832 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoA better solution to the "C stack usage is too close to the limit" problem, whereby...
mspiegel [Wed, 2 Nov 2011 15:17:42 +0000 (15:17 +0000)]
A better solution to the "C stack usage is too close to the limit" problem, whereby R objective functions and FIML objective function with ordinal data automatically force sequential computation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1831 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoDisable stack checking until a more amenable solution is found.
mspiegel [Wed, 2 Nov 2011 14:47:32 +0000 (14:47 +0000)]
Disable stack checking until a more amenable solution is found.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1830 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agobug fixes to mxOption() and illegal reference detection in mxMatrix()
mspiegel [Tue, 1 Nov 2011 15:25:34 +0000 (15:25 +0000)]
bug fixes to mxOption() and illegal reference detection in mxMatrix()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1829 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoDefensive programming for setting "Number of Cores"
mspiegel [Mon, 31 Oct 2011 15:11:53 +0000 (15:11 +0000)]
Defensive programming for setting "Number of Cores"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1828 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMultiple threads are now enabled by default.
mspiegel [Mon, 31 Oct 2011 15:06:05 +0000 (15:06 +0000)]
Multiple threads are now enabled by default.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1827 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding upper and lower bound to test case.
mspiegel [Sun, 30 Oct 2011 18:49:53 +0000 (18:49 +0000)]
Adding upper and lower bound to test case.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1826 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agochanging numerical tolerance from 0.001 to 0.002.
mspiegel [Sun, 30 Oct 2011 18:40:50 +0000 (18:40 +0000)]
changing numerical tolerance from 0.001 to 0.002.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1825 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMore bugfixes to thread-level parallelism
mspiegel [Fri, 28 Oct 2011 20:05:43 +0000 (20:05 +0000)]
More bugfixes to thread-level parallelism

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1824 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoClarifying error message for mxOption()
mspiegel [Fri, 28 Oct 2011 14:37:25 +0000 (14:37 +0000)]
Clarifying error message for mxOption()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1823 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial working version of multicore parallelism.
mspiegel [Wed, 26 Oct 2011 18:16:13 +0000 (18:16 +0000)]
Initial working version of multicore parallelism.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1822 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFix a bug I introduced while refactoring omxLookupDuplicateElement()
mspiegel [Wed, 26 Oct 2011 15:48:42 +0000 (15:48 +0000)]
Fix a bug I introduced while refactoring omxLookupDuplicateElement()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1821 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoshared memory parallelism cleanup
mspiegel [Tue, 25 Oct 2011 20:18:33 +0000 (20:18 +0000)]
shared memory parallelism cleanup

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1820 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCommitting fixes to multicore execution. Added argument 'copyState' to omxCopyMatrix...
mspiegel [Tue, 25 Oct 2011 17:49:23 +0000 (17:49 +0000)]
Committing fixes to multicore execution. Added argument 'copyState' to omxCopyMatrix() function.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1819 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCopying libnpsol.a to gcc4.5 and gcc4.6 directories for 32-bit x86
mspiegel [Sun, 23 Oct 2011 05:37:17 +0000 (05:37 +0000)]
Copying libnpsol.a to gcc4.5 and gcc4.6 directories for 32-bit x86

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1816 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoReplaced "inline" with OMXINLINE macro that can be removed for debugging
mspiegel [Fri, 21 Oct 2011 14:47:46 +0000 (14:47 +0000)]
Replaced "inline" with OMXINLINE macro that can be removed for debugging

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1815 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial commit of omxDetectCores() function, a backport of detectCores() available...
mspiegel [Thu, 20 Oct 2011 13:14:41 +0000 (13:14 +0000)]
Initial commit of omxDetectCores() function, a backport of detectCores() available in the package "parallel" in R 2.14.0

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1814 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding hasMatrixNumber and matrixNumber fields to omxMatrix object for state duplication.
mspiegel [Thu, 20 Oct 2011 12:55:07 +0000 (12:55 +0000)]
Adding hasMatrixNumber and matrixNumber fields to omxMatrix object for state duplication.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1813 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoving unused variables that have been detected by gcc.
mspiegel [Wed, 19 Oct 2011 13:45:52 +0000 (13:45 +0000)]
Removing unused variables that have been detected by gcc.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1812 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoved SetFinalReturnsRAMObjective, because it is no longer called.
tbrick [Fri, 14 Oct 2011 14:52:42 +0000 (14:52 +0000)]
Removed SetFinalReturnsRAMObjective, because it is no longer called.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1809 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBackporting fix to summary() function to OpenMx 1.1
mspiegel [Fri, 14 Oct 2011 14:17:54 +0000 (14:17 +0000)]
Backporting fix to summary() function to OpenMx 1.1

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1807 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixed a bug in the calculation of Independence likelihoods. And sped up the computat...
tbrick [Fri, 14 Oct 2011 14:12:50 +0000 (14:12 +0000)]
Fixed a bug in the calculation of Independence likelihoods.  And sped up the computation, to boot.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1806 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBug fixes to state duplication
mspiegel [Mon, 10 Oct 2011 21:02:44 +0000 (21:02 +0000)]
Bug fixes to state duplication

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1805 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded several omx-version BLAS functions to better encapsulate omxMatrix class. ...
tbrick [Mon, 10 Oct 2011 16:34:00 +0000 (16:34 +0000)]
Added several omx-version BLAS functions to better encapsulate omxMatrix class.  Also altered the API for objective function duplication to fix an error in parallel hessian calculation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1804 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoseeAlso link in mxEval.Rd
tbates [Sun, 9 Oct 2011 19:50:09 +0000 (19:50 +0000)]
seeAlso link in mxEval.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1803 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agofixed typo in plot demo for twinData.Rd
tbates [Sun, 9 Oct 2011 17:19:31 +0000 (17:19 +0000)]
fixed typo in plot demo for twinData.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1802 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded preliminary Rd file documenting twinData
tbates [Sun, 9 Oct 2011 17:13:29 +0000 (17:13 +0000)]
Added preliminary Rd file documenting twinData
Needs a reference and more info on units and processing of the data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1801 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBugfixes in omxState.c
mspiegel [Fri, 7 Oct 2011 18:10:49 +0000 (18:10 +0000)]
Bugfixes in omxState.c

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1800 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoChanges necessary to get "Number of Cores" option to do anything (namely crash OpenMx)
mspiegel [Fri, 7 Oct 2011 17:48:42 +0000 (17:48 +0000)]
Changes necessary to get "Number of Cores" option to do anything (namely crash OpenMx)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1799 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded omxState duplication process.
tbrick [Thu, 6 Oct 2011 12:52:57 +0000 (12:52 +0000)]
Added omxState duplication process.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1798 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixed bug in mxSummary
restabrook [Tue, 4 Oct 2011 14:58:36 +0000 (14:58 +0000)]
Fixed bug in mxSummary

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1797 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNow checking for OpenMP support in build system, to ignore Mac OpenMP library issues.
mspiegel [Fri, 30 Sep 2011 21:02:43 +0000 (21:02 +0000)]
Now checking for OpenMP support in build system, to ignore Mac OpenMP library issues.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1796 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoSeparating the diagonal and off-diagonal calculations in Hessian calculation.
mspiegel [Fri, 23 Sep 2011 19:17:38 +0000 (19:17 +0000)]
Separating the diagonal and off-diagonal calculations in Hessian calculation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1795 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial support for OpenMP in Hessian calculation
mspiegel [Fri, 23 Sep 2011 17:31:15 +0000 (17:31 +0000)]
Initial support for OpenMP in Hessian calculation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1794 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded LISREL Objective Frontend
mhunter [Fri, 23 Sep 2011 14:20:50 +0000 (14:20 +0000)]
Added LISREL Objective Frontend

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1793 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFirst swipe at State duplication for parallelism. Also some changes to subobjective...
tbrick [Thu, 22 Sep 2011 15:33:13 +0000 (15:33 +0000)]
First swipe at State duplication for parallelism.  Also some changes to subobjective functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1792 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoving references to "constructor" in error messages.
mspiegel [Mon, 19 Sep 2011 14:14:14 +0000 (14:14 +0000)]
Removing references to "constructor" in error messages.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1791 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded more detailed information to mxMatrix warnings and errors. The new info will...
rgore [Mon, 19 Sep 2011 13:36:19 +0000 (13:36 +0000)]
Added more detailed information to mxMatrix warnings and errors. The new info will specify the exact call to mxMatrix that caused the warning or error. Also added omxCheckWarning, which behaves just like omxCheckError but for warning messages.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1790 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoReplacing sys.call() with imxLocateFunction()
mspiegel [Wed, 14 Sep 2011 14:32:35 +0000 (14:32 +0000)]
Replacing sys.call() with imxLocateFunction()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1788 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCopying libnpsol.a from gcc4.5 into gcc4.6 directory
mspiegel [Wed, 14 Sep 2011 13:31:34 +0000 (13:31 +0000)]
Copying libnpsol.a from gcc4.5 into gcc4.6 directory

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1787 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoPropagated determinant calculation changes to FIML.
tbrick [Wed, 14 Sep 2011 12:04:55 +0000 (12:04 +0000)]
Propagated determinant calculation changes to FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1786 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixing callMethods[] array in backend
mspiegel [Fri, 9 Sep 2011 15:45:53 +0000 (15:45 +0000)]
Fixing callMethods[] array in backend

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1782 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoTimo's log det improvement
restabrook [Fri, 9 Sep 2011 14:25:32 +0000 (14:25 +0000)]
Timo's log det improvement

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1781 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixed joint ordinal-continuous bug if thresholds are result of mxAlgebra
mneale [Wed, 7 Sep 2011 13:56:28 +0000 (13:56 +0000)]
Fixed joint ordinal-continuous bug if thresholds are result of mxAlgebra

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1779 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding "Number of Cores" options to mxOptions()
mspiegel [Wed, 7 Sep 2011 13:29:44 +0000 (13:29 +0000)]
Adding "Number of Cores" options to mxOptions()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1778 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoved sQuote{digits} (which gives smart quotes)
tbates [Sun, 4 Sep 2011 15:50:01 +0000 (15:50 +0000)]
Removed sQuote{digits} (which gives smart quotes)
Regularized space around equal and after comma
Added example of using options to set sig digits
added link to options(mxOptions)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1777 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFixing joint ordinal-continuous bug when extra columns appear in dataset.
mspiegel [Fri, 2 Sep 2011 17:48:40 +0000 (17:48 +0000)]
Fixing joint ordinal-continuous bug when extra columns appear in dataset.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1775 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoFirst version of modified RAM subobjective structure.
tbrick [Fri, 2 Sep 2011 08:11:29 +0000 (08:11 +0000)]
First version of modified RAM subobjective structure.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1773 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCommitting skeleton for PPML transformation in backend.
mspiegel [Thu, 1 Sep 2011 15:27:55 +0000 (15:27 +0000)]
Committing skeleton for PPML transformation in backend.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1772 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoSome cleanup to the User Guide.
mspiegel [Wed, 31 Aug 2011 18:55:58 +0000 (18:55 +0000)]
Some cleanup to the User Guide.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1771 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdated ordinal docs
restabrook [Wed, 31 Aug 2011 16:23:58 +0000 (16:23 +0000)]
Updated ordinal docs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1770 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded flag, -mmacosx-version-min=10.4 ,to ensure backwards compatability for Mac...
rgore [Tue, 30 Aug 2011 16:15:32 +0000 (16:15 +0000)]
Added flag, -mmacosx-version-min=10.4 ,to ensure backwards compatability for Mac OS 10.4 and 10.5.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1769 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded "arch_specific_compiler_flags" to the build system
mspiegel [Mon, 29 Aug 2011 23:59:39 +0000 (23:59 +0000)]
Added "arch_specific_compiler_flags" to the build system

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1768 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoMaking dimnames= argument explicit in JointFIMLRegressionTest.R
mspiegel [Mon, 29 Aug 2011 16:11:31 +0000 (16:11 +0000)]
Making dimnames= argument explicit in JointFIMLRegressionTest.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1767 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoPreparing build system for OS X 10.4 compatibility
mspiegel [Sun, 28 Aug 2011 20:17:18 +0000 (20:17 +0000)]
Preparing build system for OS X 10.4 compatibility

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1766 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding argument 'threshnames' to R help for mxRAMObjective()
mspiegel [Mon, 22 Aug 2011 18:12:19 +0000 (18:12 +0000)]
Adding argument 'threshnames' to R help for mxRAMObjective()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1763 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCleanup of user guide whitespace related.
mspiegel [Mon, 22 Aug 2011 18:05:22 +0000 (18:05 +0000)]
Cleanup of user guide whitespace related.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1762 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded chapters for ordinal, both path and matrix, again
restabrook [Mon, 22 Aug 2011 16:53:26 +0000 (16:53 +0000)]
Added chapters for ordinal, both path and matrix, again

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1761 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdded chapters for ordinal, both path and matrix
restabrook [Mon, 22 Aug 2011 16:52:46 +0000 (16:52 +0000)]
Added chapters for ordinal, both path and matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1760 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoPerformance improvements for hollow models.
mspiegel [Mon, 22 Aug 2011 16:12:29 +0000 (16:12 +0000)]
Performance improvements for hollow models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1759 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial support for Rmpi package in OpenMx 1.1 series
mspiegel [Sun, 21 Aug 2011 18:38:15 +0000 (18:38 +0000)]
Initial support for Rmpi package in OpenMx 1.1 series

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1758 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoInitial support for Rmpi package.
mspiegel [Sun, 21 Aug 2011 17:57:32 +0000 (17:57 +0000)]
Initial support for Rmpi package.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1757 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoAdding 'threshnames' argument for mxRAMObjective() function
mspiegel [Sat, 20 Aug 2011 14:34:20 +0000 (14:34 +0000)]
Adding 'threshnames' argument for mxRAMObjective() function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1756 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoNew objective@info slot that will store all additional information from optimizer.
mspiegel [Fri, 19 Aug 2011 16:08:23 +0000 (16:08 +0000)]
New objective@info slot that will store all additional information from optimizer.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1755 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRefactoring FIML to prepare for OpenMP implementation.
mspiegel [Fri, 19 Aug 2011 14:54:49 +0000 (14:54 +0000)]
Refactoring FIML to prepare for OpenMP implementation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1754 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdating CHANGES file to reflect bugfix to omxSetParameters()
mspiegel [Fri, 19 Aug 2011 12:52:51 +0000 (12:52 +0000)]
Updating CHANGES file to reflect bugfix to omxSetParameters()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1753 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdated changes to reflect mxAlgebra man page updates.
rgore [Thu, 18 Aug 2011 16:50:48 +0000 (16:50 +0000)]
Updated changes to reflect mxAlgebra man page updates.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1752 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agogit-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1750 df83fd30-4cca-4c36-ab9d...
rgore [Thu, 18 Aug 2011 16:47:34 +0000 (16:47 +0000)]
git-svn-id: openmx.psyc.virginia.edu/svn/trunk@1750 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBug fix for omxSetParameters when lbound or ubound is NA
mspiegel [Thu, 18 Aug 2011 16:13:41 +0000 (16:13 +0000)]
Bug fix for omxSetParameters when lbound or ubound is NA

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1749 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoModifying sorted data representation in preparation for parallelization of FIML objec...
mspiegel [Tue, 16 Aug 2011 14:49:59 +0000 (14:49 +0000)]
Modifying sorted data representation in preparation for parallelization of FIML objective function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1748 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoCatching unknown matrix operator or function at mxAlgebra() or mxConstraint() declaration
mspiegel [Fri, 12 Aug 2011 22:41:19 +0000 (22:41 +0000)]
Catching unknown matrix operator or function at mxAlgebra() or mxConstraint() declaration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1747 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBug fix for mxMatrix() and symmetric matrices.
mspiegel [Sat, 6 Aug 2011 18:35:19 +0000 (18:35 +0000)]
Bug fix for mxMatrix() and symmetric matrices.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1744 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdate the nightly tests using new mxPath() interface
mspiegel [Fri, 5 Aug 2011 17:28:50 +0000 (17:28 +0000)]
Update the nightly tests using new mxPath() interface

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1743 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdated CHANGES file to include documentation of the user guide updates reflecting...
rgore [Fri, 5 Aug 2011 12:08:37 +0000 (12:08 +0000)]
Updated CHANGES file to include documentation of the user guide updates reflecting the new 'connect' slot in mxPath.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1742 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoUpdating Man pages and User Guide examples and documentation to reflect the new conne...
rgore [Fri, 5 Aug 2011 12:07:22 +0000 (12:07 +0000)]
Updating Man pages and User Guide examples and documentation to reflect the new connect slot in mxPath.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1741 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBug fix in error detection for unknown thresholds.
mspiegel [Thu, 4 Aug 2011 17:24:27 +0000 (17:24 +0000)]
Bug fix in error detection for unknown thresholds.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1740 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemove direct manipulation of model$objective@vector slot.
mspiegel [Thu, 4 Aug 2011 16:06:00 +0000 (16:06 +0000)]
Remove direct manipulation of model$objective@vector slot.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1739 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoRemoving unused global variable declaration
mspiegel [Tue, 2 Aug 2011 15:44:00 +0000 (15:44 +0000)]
Removing unused global variable declaration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1738 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoExtracting SADMVN call into a separate wrapper function
mspiegel [Tue, 2 Aug 2011 15:33:55 +0000 (15:33 +0000)]
Extracting SADMVN call into a separate wrapper function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1737 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

6 years agoBackporting the fix from r1734 into the 1.1 stable branch
mspiegel [Mon, 1 Aug 2011 20:25:34 +0000 (20:25 +0000)]
Backporting the fix from r1734 into the 1.1 stable branch

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1736 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1