openmx:openmx.git
7 years agoAllow multiple 'references' in single call to omxInterval function.
mspiegel [Sat, 17 Apr 2010 20:45:00 +0000 (20:45 +0000)]
Allow multiple 'references' in single call to omxInterval function.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1213 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoOops. Finishing patch to alias bug in mxAlgebra().
mspiegel [Fri, 16 Apr 2010 00:17:20 +0000 (00:17 +0000)]
Oops.  Finishing patch to alias bug in mxAlgebra().

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1212 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agofixed aliasing bug in mxAlgebra() with external variables and constant values
mspiegel [Thu, 15 Apr 2010 23:57:03 +0000 (23:57 +0000)]
fixed aliasing bug in mxAlgebra() with external variables and constant values

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1211 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoImproving readability of OrdinalTestAlgebra.R.
mspiegel [Thu, 15 Apr 2010 03:51:35 +0000 (03:51 +0000)]
Improving readability of OrdinalTestAlgebra.R.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1210 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoImproving readability of OrdinalTest.R
mspiegel [Thu, 15 Apr 2010 03:41:23 +0000 (03:41 +0000)]
Improving readability of OrdinalTest.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1209 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded 'numStats' argument to mxAlgebraObjective() and summary()
mspiegel [Wed, 14 Apr 2010 20:09:24 +0000 (20:09 +0000)]
Added 'numStats' argument to mxAlgebraObjective() and summary()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1208 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFix front-end error in reporting confidence intervals
mspiegel [Wed, 14 Apr 2010 17:27:21 +0000 (17:27 +0000)]
Fix front-end error in reporting confidence intervals

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1207 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSmall changes to model names in SimpleConfidenceIntervals.R
mspiegel [Wed, 14 Apr 2010 04:22:41 +0000 (04:22 +0000)]
Small changes to model names in SimpleConfidenceIntervals.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1206 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing bugs in the calculation of confidence intervals.
tbrick [Wed, 14 Apr 2010 04:09:56 +0000 (04:09 +0000)]
Fixing bugs in the calculation of confidence intervals.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1205 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing bugs in confidence interval error codes.
mspiegel [Wed, 14 Apr 2010 02:01:01 +0000 (02:01 +0000)]
Fixing bugs in confidence interval error codes.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1204 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed index error with confidence intervals specification.
mspiegel [Wed, 14 Apr 2010 01:25:14 +0000 (01:25 +0000)]
Fixed index error with confidence intervals specification.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1203 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixing bugs in confidence interval calculation.
mspiegel [Tue, 13 Apr 2010 22:14:07 +0000 (22:14 +0000)]
Fixing bugs in confidence interval calculation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1202 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agonew mxCompare(base, comparison, digits = 3)
mspiegel [Mon, 12 Apr 2010 19:08:57 +0000 (19:08 +0000)]
new mxCompare(base, comparison, digits = 3)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1201 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded 'numObs' argument to mxAlgebraObjective()
mspiegel [Sun, 11 Apr 2010 19:50:20 +0000 (19:50 +0000)]
Added 'numObs' argument to mxAlgebraObjective()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1200 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agosummary(model) summarizes data only when type = 'raw'
mspiegel [Sun, 11 Apr 2010 19:16:37 +0000 (19:16 +0000)]
summary(model) summarizes data only when type = 'raw'

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1199 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoChecked in implementation of mergesort.
mspiegel [Sun, 11 Apr 2010 18:50:48 +0000 (18:50 +0000)]
Checked in implementation of mergesort.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1198 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded sorting for eigenvalue and eigenvector functions. Implemented back-end handlin...
tbrick [Fri, 9 Apr 2010 22:53:50 +0000 (22:53 +0000)]
Added sorting for eigenvalue and eigenvector functions.  Implemented back-end handling of confidence intervals and reporting of optimizer error codes for CIs.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1197 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded confidence intervals example from http://openmx.psyc.virginia.edu/thread/153...
mspiegel [Sat, 3 Apr 2010 17:11:11 +0000 (17:11 +0000)]
Added confidence intervals example from openmx.psyc.virginia.edu/thread/153#comment-1054

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1196 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSpecification of confidence intervals for free parameters with omxInterval()
mspiegel [Fri, 2 Apr 2010 20:39:04 +0000 (20:39 +0000)]
Specification of confidence intervals for free parameters with omxInterval()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1195 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoCorrecting a bug: interaction of autoboxing and populating definition variables.
mspiegel [Fri, 2 Apr 2010 19:15:32 +0000 (19:15 +0000)]
Correcting a bug: interaction of autoboxing and populating definition variables.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1194 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoInitial commit of MxInterval class, and update copyright year information
mspiegel [Tue, 30 Mar 2010 21:31:41 +0000 (21:31 +0000)]
Initial commit of MxInterval class, and update copyright year information

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1193 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMinor code refactoring.
mspiegel [Tue, 30 Mar 2010 19:31:25 +0000 (19:31 +0000)]
Minor code refactoring.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1192 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoR documentation for rvectorize() and cvectorize()
mspiegel [Tue, 30 Mar 2010 17:44:05 +0000 (17:44 +0000)]
R documentation for rvectorize() and cvectorize()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1191 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoImproved error messages for mxMatrix() calls
mspiegel [Tue, 30 Mar 2010 04:22:26 +0000 (04:22 +0000)]
Improved error messages for mxMatrix() calls

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1190 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded an early implementation of eigenvalues/eigenvectors and fixed some problems...
tbrick [Mon, 29 Mar 2010 20:35:31 +0000 (20:35 +0000)]
Added an early implementation of eigenvalues/eigenvectors and fixed some problems in omxRowObjective.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1189 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoInitial commit of mxCompare() function.
mspiegel [Sat, 27 Mar 2010 22:32:27 +0000 (22:32 +0000)]
Initial commit of mxCompare() function.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1188 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agonew signature for omxSetParameters(model, labels, free, values, lbound, ubound, indep)
mspiegel [Sat, 27 Mar 2010 17:05:20 +0000 (17:05 +0000)]
new signature for omxSetParameters(model, labels, free, values, lbound, ubound, indep)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1187 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRenaming arguments in omxMnor() and omxAllInt()
mspiegel [Sat, 27 Mar 2010 16:20:09 +0000 (16:20 +0000)]
Renaming arguments in omxMnor() and omxAllInt()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1186 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAuthor order + 'Date' field in DESCRIPTION file.
mspiegel [Thu, 25 Mar 2010 14:56:33 +0000 (14:56 +0000)]
Author order + 'Date' field in DESCRIPTION file.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1185 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoChanging MxPath data structure from a list to a S4 object
mspiegel [Wed, 24 Mar 2010 20:50:35 +0000 (20:50 +0000)]
Changing MxPath data structure from a list to a S4 object

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1184 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdating CHANGES file.
mspiegel [Wed, 24 Mar 2010 15:26:13 +0000 (15:26 +0000)]
Updating CHANGES file.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1183 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoperformance improvement to namespace conversion
mspiegel [Tue, 23 Mar 2010 20:24:32 +0000 (20:24 +0000)]
performance improvement to namespace conversion

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1182 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoNew mxConstraint() interface implementation
mspiegel [Mon, 22 Mar 2010 17:12:51 +0000 (17:12 +0000)]
New mxConstraint() interface implementation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1181 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoEliminate debugging output
mspiegel [Sat, 20 Mar 2010 21:07:18 +0000 (21:07 +0000)]
Eliminate debugging output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1180 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded error checking for mxBounds() with undefined parameter names
mspiegel [Sat, 20 Mar 2010 16:25:44 +0000 (16:25 +0000)]
Added error checking for mxBounds() with undefined parameter names

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1179 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoImproved the R documentation for MxAlgebra and mxAlgebraObjective
mspiegel [Thu, 18 Mar 2010 18:45:04 +0000 (18:45 +0000)]
Improved the R documentation for MxAlgebra and mxAlgebraObjective

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1178 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMore work on the mxDeparse() function
mspiegel [Wed, 17 Mar 2010 21:58:47 +0000 (21:58 +0000)]
More work on the mxDeparse() function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1177 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoadded directory to repository for nightly tests ("make nightly")
mspiegel [Wed, 17 Mar 2010 14:18:11 +0000 (14:18 +0000)]
added directory to repository for nightly tests ("make nightly")

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1176 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoImplemented proposed changes to specification of ordinal data.
mspiegel [Wed, 17 Mar 2010 03:47:08 +0000 (03:47 +0000)]
Implemented proposed changes to specification of ordinal data.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1175 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed typo in error message.
mspiegel [Tue, 16 Mar 2010 21:01:56 +0000 (21:01 +0000)]
Fixed typo in error message.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1174 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoPartial implementation of mxDeparse() function
mspiegel [Mon, 15 Mar 2010 04:15:06 +0000 (04:15 +0000)]
Partial implementation of mxDeparse() function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1173 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoIncrement version counter to 0.2.10-1172
mspiegel [Sun, 14 Mar 2010 17:52:02 +0000 (17:52 +0000)]
Increment version counter to 0.2.10-1172

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1172 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoEscaping character for reStructured Text format
mspiegel [Sun, 14 Mar 2010 17:41:10 +0000 (17:41 +0000)]
Escaping character for reStructured Text format

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1171 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoWhitespace changes in documentation file.
mspiegel [Sun, 14 Mar 2010 06:22:51 +0000 (06:22 +0000)]
Whitespace changes in documentation file.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1170 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMore corrections to documentation.
mspiegel [Sun, 14 Mar 2010 06:18:04 +0000 (06:18 +0000)]
More corrections to documentation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1169 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMore corrections to documentation.
mspiegel [Sun, 14 Mar 2010 00:15:25 +0000 (00:15 +0000)]
More corrections to documentation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1168 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMore bugfixes.
mspiegel [Sat, 13 Mar 2010 23:57:49 +0000 (23:57 +0000)]
More bugfixes.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1167 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMore corrections to documentation
mspiegel [Sat, 13 Mar 2010 23:24:53 +0000 (23:24 +0000)]
More corrections to documentation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1166 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoMore bugfixes to documentation
mspiegel [Sat, 13 Mar 2010 04:24:33 +0000 (04:24 +0000)]
More bugfixes to documentation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1165 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSphinx to R document generator, and error fixes.
mspiegel [Sat, 13 Mar 2010 03:50:50 +0000 (03:50 +0000)]
Sphinx to R document generator, and error fixes.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1164 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded temporal information to CHANGES file (dates)
mspiegel [Sat, 13 Mar 2010 02:54:57 +0000 (02:54 +0000)]
Added temporal information to CHANGES file (dates)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1163 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFix documentatioin + demo errors brought to our attention by dbishop
mspiegel [Fri, 12 Mar 2010 15:42:28 +0000 (15:42 +0000)]
Fix documentatioin + demo errors brought to our attention by dbishop

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1162 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoStarted work on an "OpenMx style guide" section to the User Guide.
mspiegel [Thu, 11 Mar 2010 19:45:49 +0000 (19:45 +0000)]
Started work on an "OpenMx style guide" section to the User Guide.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1161 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoreimplemented names(model), model$foo, and model$foo <- value to return all component...
mspiegel [Thu, 11 Mar 2010 16:40:50 +0000 (16:40 +0000)]
reimplemented names(model), model$foo, and model$foo <- value to return all components of a model tree

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1160 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoreimplemented summary() function to handle unused data rows, and independent submodels
mspiegel [Wed, 10 Mar 2010 02:21:49 +0000 (02:21 +0000)]
reimplemented summary() function to handle unused data rows, and independent submodels

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1159 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoStrange behavior with omxCheckIdentical()
mspiegel [Mon, 8 Mar 2010 22:24:03 +0000 (22:24 +0000)]
Strange behavior with omxCheckIdentical()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1158 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdding test statements for observed statistics counts
mspiegel [Mon, 8 Mar 2010 21:53:14 +0000 (21:53 +0000)]
Adding test statements for observed statistics counts

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1157 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoadded timestamp to summary() output
mspiegel [Sat, 6 Mar 2010 07:05:51 +0000 (07:05 +0000)]
added timestamp to summary() output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1156 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoforbidden characters "+-!~?:*/^%<>=&|$"
mspiegel [Sat, 6 Mar 2010 06:46:14 +0000 (06:46 +0000)]
forbidden characters "+-!~?:*/^%<>=&|$"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1155 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdd four test case models that exercise the solve(I-A) speedup.
sboker [Fri, 5 Mar 2010 23:23:13 +0000 (23:23 +0000)]
Add four test case models that exercise the solve(I-A) speedup.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1154 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoBack-end implementation of cvectorize and rvectorize.
tbrick [Fri, 5 Mar 2010 18:02:55 +0000 (18:02 +0000)]
Back-end implementation of cvectorize and rvectorize.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1153 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agorvectorize, cvectorize in CHANGES file
mspiegel [Fri, 5 Mar 2010 16:43:08 +0000 (16:43 +0000)]
rvectorize, cvectorize in CHANGES file

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1152 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSkeleton code for rvectorize() and cvectorize()
mspiegel [Fri, 5 Mar 2010 16:31:31 +0000 (16:31 +0000)]
Skeleton code for rvectorize() and cvectorize()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1151 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoSlight changes to error reporting in bad matrix access, uncalculated std. errors...
tbrick [Thu, 4 Mar 2010 23:16:09 +0000 (23:16 +0000)]
Slight changes to error reporting in bad matrix access, uncalculated std. errors, and poor omxAllint thresholds.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1150 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoReplacing calloc() with Calloc().
mspiegel [Thu, 4 Mar 2010 23:03:55 +0000 (23:03 +0000)]
Replacing calloc() with Calloc().

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1149 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agotwo bugfixes regarding data in the front-end
mspiegel [Thu, 4 Mar 2010 19:19:26 +0000 (19:19 +0000)]
two bugfixes regarding data in the front-end

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1148 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoIncrementing version counter to 0.2.9-1147
mspiegel [Thu, 4 Mar 2010 05:15:41 +0000 (05:15 +0000)]
Incrementing version counter to 0.2.9-1147

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1147 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoForgot to put the require(nlme) into MultilevelUniRandomSlopeInt.R
sboker [Thu, 4 Mar 2010 00:10:47 +0000 (00:10 +0000)]
Forgot to put the require(nlme) into MultilevelUniRandomSlopeInt.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1146 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdd the univariate multilevel random slopes and intercepts model to the tests.
sboker [Thu, 4 Mar 2010 00:02:09 +0000 (00:02 +0000)]
Add the univariate multilevel random slopes and intercepts model to the tests.
This model requires the library "nlme"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1145 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded another test for cycle detection
mspiegel [Wed, 3 Mar 2010 22:45:02 +0000 (22:45 +0000)]
Added another test for cycle detection

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1144 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded a test for dependency loops in objective functions.
tbrick [Wed, 3 Mar 2010 22:39:20 +0000 (22:39 +0000)]
Added a test for dependency loops in objective functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1143 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoBugfix for detection of cycles when multiple objective functions are used.
mspiegel [Wed, 3 Mar 2010 22:06:11 +0000 (22:06 +0000)]
Bugfix for detection of cycles when multiple objective functions are used.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1142 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoWhoops. Unchecked DEBUGMX from Makevars.
tbrick [Wed, 3 Mar 2010 21:36:00 +0000 (21:36 +0000)]
Whoops. Unchecked DEBUGMX from Makevars.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1141 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRemoved inlining from mxMatrix functions.
tbrick [Wed, 3 Mar 2010 21:32:44 +0000 (21:32 +0000)]
Removed inlining from mxMatrix functions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1140 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed a seg fault in standard error calculations for failed optimizations.
tbrick [Wed, 3 Mar 2010 19:44:07 +0000 (19:44 +0000)]
Fixed a seg fault in standard error calculations for failed optimizations.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1139 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRemove dependency on the psyc package from three tests in models/passing.
sboker [Wed, 3 Mar 2010 19:12:09 +0000 (19:12 +0000)]
Remove dependency on the psyc package from three tests in models/passing.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1138 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded tests for standard deviations and modified StandardErrorsSimple.R to be correct.
sboker [Wed, 3 Mar 2010 19:07:50 +0000 (19:07 +0000)]
Added tests for standard deviations and modified StandardErrorsSimple.R to be correct.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1137 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAttempt to fix a bug in the Standard Errors calculated by the back-end. Also changes...
tbrick [Wed, 3 Mar 2010 19:02:19 +0000 (19:02 +0000)]
Attempt to fix a bug in the Standard Errors calculated by the back-end.  Also changes return values when hessians and standard errors are requested but cannot be calculated.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1136 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoTurning on standard error estimates by default.
mspiegel [Wed, 3 Mar 2010 19:02:05 +0000 (19:02 +0000)]
Turning on standard error estimates by default.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1135 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agobugfix for ordinal FIML with columns that are not threshold columns
mspiegel [Wed, 3 Mar 2010 18:17:06 +0000 (18:17 +0000)]
bugfix for ordinal FIML with columns that are not threshold columns

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1134 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoIncrement the version counter to 0.2.8-1133
mspiegel [Wed, 3 Mar 2010 04:24:18 +0000 (04:24 +0000)]
Increment the version counter to 0.2.8-1133

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1133 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoremoving standard errors from summary()
mspiegel [Tue, 2 Mar 2010 22:13:42 +0000 (22:13 +0000)]
removing standard errors from summary()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1131 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoCode cleanup for data.frame conversion
mspiegel [Tue, 2 Mar 2010 17:24:14 +0000 (17:24 +0000)]
Code cleanup for data.frame conversion

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1130 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoRemoving illegal special case in element powering.
mspiegel [Tue, 2 Mar 2010 05:43:45 +0000 (05:43 +0000)]
Removing illegal special case in element powering.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1129 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoImplemented kronecker exponentiation operator
mspiegel [Tue, 2 Mar 2010 05:21:58 +0000 (05:21 +0000)]
Implemented kronecker exponentiation operator

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1128 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed a memory leak in omxAlgebraFunctions.
tbrick [Mon, 1 Mar 2010 23:47:05 +0000 (23:47 +0000)]
Fixed a memory leak in omxAlgebraFunctions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1127 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed a bug in the means calculation for Ordinal FIML.
tbrick [Mon, 1 Mar 2010 18:30:29 +0000 (18:30 +0000)]
Fixed a bug in the means calculation for Ordinal FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1126 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoIncrement the binary release number.
mspiegel [Sun, 28 Feb 2010 17:26:57 +0000 (17:26 +0000)]
Increment the binary release number.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1125 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoOrdinal FIML objective in vector mode now reports a likelihood of 1.0 for data rows...
tbrick [Sun, 28 Feb 2010 15:41:16 +0000 (15:41 +0000)]
Ordinal FIML objective in vector mode now reports a likelihood of 1.0 for data rows where all values are NA.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1124 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agobugfix for using data.frame with integer type columns that are not factors
mspiegel [Sun, 28 Feb 2010 07:08:39 +0000 (07:08 +0000)]
bugfix for using data.frame with integer type columns that are not factors

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1123 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded 'unsafe' argument to mxRun.
mspiegel [Sat, 27 Feb 2010 23:27:47 +0000 (23:27 +0000)]
Added 'unsafe' argument to mxRun.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1122 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFilter definition variables based on data source of objective function
mspiegel [Wed, 24 Feb 2010 16:00:32 +0000 (16:00 +0000)]
Filter definition variables based on data source of objective function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1120 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoPull definition variable test out of inner loop
mspiegel [Wed, 24 Feb 2010 04:52:33 +0000 (04:52 +0000)]
Pull definition variable test out of inner loop

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1119 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoWhoops. Correction to the last update.
tbrick [Wed, 24 Feb 2010 04:47:15 +0000 (04:47 +0000)]
Whoops.  Correction to the last update.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1118 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoUpdated to actually include the correction to the definition variable issue.
tbrick [Wed, 24 Feb 2010 04:17:09 +0000 (04:17 +0000)]
Updated to actually include the correction to the definition variable issue.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1117 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoFixed an issue with definition variable population in FIML algebras.
tbrick [Wed, 24 Feb 2010 04:06:41 +0000 (04:06 +0000)]
Fixed an issue with definition variable population in FIML algebras.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1116 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoURL correction (already fixed on website)
mspiegel [Tue, 23 Feb 2010 14:50:41 +0000 (14:50 +0000)]
URL correction (already fixed on website)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1115 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoIncrement version number to 0.2.6-1114
mspiegel [Tue, 23 Feb 2010 14:20:34 +0000 (14:20 +0000)]
Increment version number to 0.2.6-1114

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1114 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoAdded copyright information to test suite models
mspiegel [Tue, 23 Feb 2010 14:15:31 +0000 (14:15 +0000)]
Added copyright information to test suite models

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1113 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

7 years agoupdates
hmaes [Tue, 23 Feb 2010 06:02:01 +0000 (06:02 +0000)]
updates

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@1112 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1