Fixed a bug where could not be accessed from a model object, and adjusted one test...
[openmx:openmx.git] / src /
2015-02-07 jpritikinRename mxLog_wrapper to avoid exporting
2015-02-05 jpritikinEnsure per-row likelihoods reflect the correct paramete...
2015-02-04 tbrickRe-enabled automatic return of FIML row likelihoods.
2015-02-02 jpritikinStore the gradient when we perform finite differences...
2015-01-28 rkirkpatrickChange from Rf_protect() statements to use of the Scope...
2015-01-28 rkirkpatrickClean up and streamline code for GREML derivatives.
2015-01-28 jpritikinCarefully refactor confidence intervals 12/12
2015-01-28 jpritikinCarefully refactor confidence intervals 11/12
2015-01-28 jpritikinCarefully refactor confidence intervals 10/12
2015-01-28 jpritikinCarefully refactor confidence intervals 9/12
2015-01-28 jpritikinCarefully refactor confidence intervals 8/12
2015-01-28 jpritikinCarefully refactor confidence intervals 7/12
2015-01-28 jpritikinCarefully refactor confidence intervals 6/12
2015-01-28 jpritikinCarefully refactor confidence intervals 5/12
2015-01-28 jpritikinCarefully refactor confidence intervals 4/12
2015-01-28 jpritikinCarefully refactor confidence intervals 3/12
2015-01-28 jpritikinCarefully refactor confidence intervals 2/12
2015-01-28 jpritikinCarefully refactor confidence intervals 1/12
2015-01-28 jpritikinAdd diag
2015-01-27 rkirkpatrickInelegantly coded but working implementation of analyti...
2015-01-27 jpritikinRepair free memory read in debug code (no serious conse...
2015-01-26 jpritikinSimplify verbose plumbing
2015-01-26 jpritikinContinue refactor of ComputeGD
2015-01-26 jpritikinRemove commented debug code
2015-01-26 jpritikinFactor out diagnostics
2015-01-26 jpritikinCSOLNP: Move control parameters into CSOLNPFit structure
2015-01-26 jpritikinReimagine CSOLNPFit as GradientOptimizerAPI
2015-01-26 jpritikinBegin refactor of optimizer interface
2015-01-26 jpritikinDon't try to nudge zero starts again
2015-01-24 jpritikinBetter implementation for IterationError
2015-01-23 jpritikinTweak suggested debug options
2015-01-23 jpritikinTiny code cleanup of NPSOL CIs
2015-01-23 jpritikinReport iteration error when threads are enabled
2015-01-23 mhunterDo not freak out. It is just updating the copyright.
2015-01-23 tbrickCorrected a bug where out-of-order threshold errors...
2015-01-20 jpritikinPermit run-time toggling of protect depth diagnostics
2015-01-20 rkirkpatrickRequest GREML fixed effects via argument to expectation...
2015-01-16 rkirkpatrickGREML fixed effects and test model; code cleanup.
2015-01-16 jpritikinTidy Makevars
2015-01-16 jpritikinRevert recent CSOLNP changes
2015-01-16 jpritikinEnsure memory is not overwritten
2015-01-15 mzaheryCSOLNP: problems in recent Eigen commits fixed
2015-01-14 jpritikinSuggest gcc option -Og for debugging compatible optimiz...
2015-01-14 rkirkpatrickSwitch from Eigen::Map to the safer EigenMatrixAdaptor...
2015-01-14 jpritikinSmall fix for CSOLNP: Gradually writing subnp function...
2015-01-13 jpritikinMake EigenMatrixAdaptor compile (oops)
2015-01-13 jpritikinAdd EigenMatrixAdaptor
2015-01-13 mzaheryCSOLNP: correcting revision 4137
2015-01-13 rkirkpatrickMinimal, rough implementation of GREML.
2015-01-09 mzaheryCSOLNP: Writing subnp function in Eigen (6)
2015-01-09 mzaheryCSOLNP: Writing subnp function in Eigen (5)
2015-01-09 mzaheryCSOLNP: Writing subnp function in Eigen (4)
2015-01-09 mzaheryCSOLNP: Writing subnp function in Eigen (3)
2015-01-09 mzaheryCSOLNP: Writing subnp function in Eigen (2)
2015-01-09 mzaheryCSOLNP: Gradually writing subnp function in Eigen (1)
2015-01-07 jpritikinDeadcode
2015-01-07 jpritikinUse 'int' for Eigen rows and columns
2015-01-07 jpritikinAdd omxEnsureColumnMajor API
2015-01-07 jpritikinRemove '#define EPSILON'; clashes with stan headers
2015-01-07 jpritikinPrevent Varadhan2008 from failing near convergence
2015-01-07 jpritikinThrow error on attempt to invert incomplete Hessian
2014-12-19 jpritikinCSOLNP: Correct exclusion of inequality constraints...
2014-12-18 jpritikinRemove unused variable
2014-12-18 jpritikinWhen checkpointing fit, record who requested it
2014-12-18 jpritikinDeadcode removal
2014-12-18 jpritikinRestore parallel processing for CIs
2014-12-18 jpritikinAdd a checkpoint entry for each CI attempt
2014-12-18 jpritikinAdd "Checkpoint Fullpath" to override output destination
2014-12-18 jpritikinConsolidate starting value nudging logic in ComputeGD
2014-12-18 jpritikinTry harder to keep CIs ordered properly vs estimate
2014-12-17 jpritikinCSOLNP: Avoid reuse of obm for more than 1 purpose
2014-12-17 jpritikinCSOLNP: Simplify CI calculation
2014-12-17 jpritikinCSOLNP: Tidy optimizer reporting
2014-12-17 jpritikinCSOLNP: Count the number of major iterations
2014-12-16 jpritikinCSOLNP: Return stuff via CSOLNPFit; isolate Matrix...
2014-12-16 jpritikinCSOLNP: Remove some redundent information
2014-12-16 jpritikinRemove template argument from CSOLNP::solnp
2014-12-16 jpritikinStore equality & inequality results in CSOLNPFit
2014-12-16 yangReduce variable lifetime
2014-12-16 jpritikinTidy some minor valgrind issues
2014-12-16 jpritikinCSOLNP: Convert control param to Eigen vector
2014-12-16 jpritikinCSOLNP: Move bounds to CSOLNPFit; remove lots of deadcode
2014-12-15 jpritikinCSOLNP: Move inequality bounds to CSOLNPFit
2014-12-15 jpritikinCSOLNP: Remove Matrix arg from CSOLNPFit::solFun
2014-12-15 jpritikinCSOLNP: Remove GLOB_ prefix since variables are no...
2014-12-15 jpritikinCSOLNP: Eliminate more globals
2014-12-15 jpritikinCSOLNP: Continue refactoring API
2014-12-15 jpritikinCSOLNP: Pass parameter vector using Eigen
2014-12-15 jpritikinCSOLNP: Rewrite omxProcessConstraintsCsolnp in Eigen
2014-12-15 jpritikinDocument constraint types better (in source code)
2014-12-15 jpritikinCSOLNP: Don't bother creating the unused solEqB matrix
2014-12-15 jpritikinCSOLNP: Eliminate reliance on all-zero solEqB
2014-12-15 jpritikinConstraints bounds are determined by the type
2014-12-15 jpritikinSimplify setup of constraints
2014-12-15 jpritikinCSOLNP: Put in temporary fix for conformability of...
2014-12-15 jpritikinCSOLNP: Fix some problems revealed by Eigen conformabil...
2014-12-15 jpritikinRework calculation of compiler args; add IMX_SAFE switch
2014-12-11 jpritikinBA81: Need to fail hard
2014-12-10 jpritikinBA81: Prohibit all NA rows
2014-12-05 jpritikinCSOLNP: Convert ind to Eigen; make easier to understand
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