openmx:openmx.git
3 years agoNote code duplication
jpritikin [Thu, 23 Jan 2014 16:22:53 +0000 (16:22 +0000)]
Note code duplication

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3056 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPermit rescaling of log-likelihood
jpritikin [Thu, 23 Jan 2014 16:03:17 +0000 (16:03 +0000)]
Permit rescaling of log-likelihood

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3055 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove old custom prior stuff (part 2)
jpritikin [Thu, 23 Jan 2014 16:03:16 +0000 (16:03 +0000)]
Remove old custom prior stuff (part 2)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3054 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAllow MxCompute C objects to set values in their R objects (part 2)
jpritikin [Sat, 18 Jan 2014 23:09:27 +0000 (23:09 +0000)]
Allow MxCompute C objects to set values in their R objects (part 2)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3053 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd more matrix operations
jpritikin [Fri, 17 Jan 2014 19:25:51 +0000 (19:25 +0000)]
Add more matrix operations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3052 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFactor out code to invert the Hessian
jpritikin [Fri, 17 Jan 2014 19:25:40 +0000 (19:25 +0000)]
Factor out code to invert the Hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3051 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRewrite second order test; rename to ComputeHessianQuality
jpritikin [Fri, 17 Jan 2014 19:25:32 +0000 (19:25 +0000)]
Rewrite second order test; rename to ComputeHessianQuality

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3050 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove deadcode
jpritikin [Fri, 17 Jan 2014 19:25:18 +0000 (19:25 +0000)]
Remove deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3049 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove old custom prior stuff
jpritikin [Fri, 17 Jan 2014 19:25:11 +0000 (19:25 +0000)]
Remove old custom prior stuff

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3048 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReport # of function evaluations
jpritikin [Fri, 17 Jan 2014 19:25:03 +0000 (19:25 +0000)]
Report # of function evaluations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3047 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMake MxRList into a C++ class
jpritikin [Fri, 17 Jan 2014 19:24:56 +0000 (19:24 +0000)]
Make MxRList into a C++ class

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3046 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "Fix standard error calculation"
jpritikin [Tue, 7 Jan 2014 16:01:39 +0000 (16:01 +0000)]
Revert "Fix standard error calculation"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3045 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReport Hessian consistently
jpritikin [Sun, 5 Jan 2014 18:50:18 +0000 (18:50 +0000)]
Report Hessian consistently

The other Hessians ought to be reported in the output slot of their
respective Compute objects. estimatedHessian should be in ComputeGD and
calculatedHessian should be in ComputeEstimatedHessian.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3043 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix standard error calculation
jpritikin [Sun, 5 Jan 2014 18:21:21 +0000 (18:21 +0000)]
Fix standard error calculation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3042 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoConsolidate reporting of the gradient
jpritikin [Thu, 2 Jan 2014 19:20:19 +0000 (19:20 +0000)]
Consolidate reporting of the gradient

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3041 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReport Newton-Raphson stuff in slots
jpritikin [Thu, 2 Jan 2014 19:20:08 +0000 (19:20 +0000)]
Report Newton-Raphson stuff in slots

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3040 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoConsolidate reporting of the fit
jpritikin [Thu, 2 Jan 2014 19:19:55 +0000 (19:19 +0000)]
Consolidate reporting of the fit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3039 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReport estimate from 1 place
jpritikin [Thu, 2 Jan 2014 19:19:42 +0000 (19:19 +0000)]
Report estimate from 1 place

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3038 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAllow MxCompute C objects to set values in their R objects
jpritikin [Thu, 2 Jan 2014 19:19:31 +0000 (19:19 +0000)]
Allow MxCompute C objects to set values in their R objects

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3037 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReduce tolerance for condition number
jpritikin [Thu, 2 Jan 2014 19:19:14 +0000 (19:19 +0000)]
Reduce tolerance for condition number

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3036 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoUpdate copyright.
mhunter [Tue, 31 Dec 2013 21:38:10 +0000 (21:38 +0000)]
Update copyright.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3035 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDon't worry. I just updated the copyright year.
mhunter [Tue, 31 Dec 2013 21:36:57 +0000 (21:36 +0000)]
Don't worry.  I just updated the copyright year.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3034 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSEM reorg
jpritikin [Tue, 31 Dec 2013 00:21:40 +0000 (00:21 +0000)]
SEM reorg

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3033 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSEM debugging
jpritikin [Tue, 31 Dec 2013 00:21:32 +0000 (00:21 +0000)]
SEM debugging

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3032 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCompute condition number of information matrix
jpritikin [Tue, 31 Dec 2013 00:21:27 +0000 (00:21 +0000)]
Compute condition number of information matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3031 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSEM create pseudo-history if history is not working
jpritikin [Tue, 31 Dec 2013 00:21:17 +0000 (00:21 +0000)]
SEM create pseudo-history if history is not working

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3030 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRe-think semantics of COMPUTE_INFO
jpritikin [Tue, 31 Dec 2013 00:21:11 +0000 (00:21 +0000)]
Re-think semantics of COMPUTE_INFO

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3029 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPartially fix sandwich
jpritikin [Tue, 31 Dec 2013 00:21:06 +0000 (00:21 +0000)]
Partially fix sandwich

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3028 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRework SE reporting
jpritikin [Tue, 31 Dec 2013 00:20:58 +0000 (00:20 +0000)]
Rework SE reporting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3027 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImprove debug output
jpritikin [Tue, 31 Dec 2013 00:20:50 +0000 (00:20 +0000)]
Improve debug output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3026 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix iteration counter
jpritikin [Tue, 31 Dec 2013 00:20:44 +0000 (00:20 +0000)]
Fix iteration counter

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3025 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "Move some result reporting to glue"
jpritikin [Mon, 30 Dec 2013 22:42:37 +0000 (22:42 +0000)]
Revert "Move some result reporting to glue"

I think this needs to be done at some point, but I don't have time to
untangle it at the moment.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3024 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMove some result reporting to glue
jpritikin [Mon, 30 Dec 2013 01:58:01 +0000 (01:58 +0000)]
Move some result reporting to glue

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3023 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRestore original omxRecompute semantics
jpritikin [Mon, 23 Dec 2013 21:36:21 +0000 (21:36 +0000)]
Restore original omxRecompute semantics

However, it is necessary to change import/export to call a separate
recompute-ish API to avoid useless fit function computations. Most
likely, a better name could be devised than mxInitialCompute.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3022 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoControl some ComputeEstimatedHessian knobs from R
jpritikin [Mon, 23 Dec 2013 21:36:15 +0000 (21:36 +0000)]
Control some ComputeEstimatedHessian knobs from R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3021 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDo not use roxygen to create Collate field
jpritikin [Fri, 20 Dec 2013 00:32:20 +0000 (00:32 +0000)]
Do not use roxygen to create Collate field

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3020 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove latent distribution gradients
jpritikin [Tue, 17 Dec 2013 18:50:30 +0000 (18:50 +0000)]
Remove latent distribution gradients

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3019 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMaybe sandwich working
jpritikin [Tue, 17 Dec 2013 18:50:24 +0000 (18:50 +0000)]
Maybe sandwich working

After looking at Yuan, Cheng, & Patton (2013), it seems unlikely that
latent distribution gradients are of much utility. At the previous
commit, they are working and validated against numDeriv. I will remove
them in the next commit.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3018 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoOptimize latent distribution gradients 3/3
jpritikin [Tue, 17 Dec 2013 18:50:18 +0000 (18:50 +0000)]
Optimize latent distribution gradients 3/3

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3017 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoOptimize latent distribution gradients 2/3
jpritikin [Tue, 17 Dec 2013 18:50:14 +0000 (18:50 +0000)]
Optimize latent distribution gradients 2/3

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3016 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoOptimize latent distribution gradients 1/3
jpritikin [Tue, 17 Dec 2013 18:50:11 +0000 (18:50 +0000)]
Optimize latent distribution gradients 1/3

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3015 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoLatent distribution parameters, gradient and information
jpritikin [Tue, 17 Dec 2013 18:50:06 +0000 (18:50 +0000)]
Latent distribution parameters, gradient and information

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3014 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoGive up immediately if iteration limit is reached
jpritikin [Tue, 17 Dec 2013 18:49:58 +0000 (18:49 +0000)]
Give up immediately if iteration limit is reached

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3013 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix State Space warnings.
mhunter [Mon, 16 Dec 2013 16:59:47 +0000 (16:59 +0000)]
Fix State Space warnings.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3012 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImprove log message
jpritikin [Mon, 16 Dec 2013 14:44:29 +0000 (14:44 +0000)]
Improve log message

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3011 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSet scores with no information to NA
jpritikin [Mon, 16 Dec 2013 14:44:26 +0000 (14:44 +0000)]
Set scores with no information to NA

Otherwise the scores reflect the prior distribution. Strictly speaking,
this is correct, but it's probably not what an analyst would expect.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3010 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAllow non-bifactor design matrix
jpritikin [Sat, 14 Dec 2013 12:04:37 +0000 (12:04 +0000)]
Allow non-bifactor design matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3009 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoExpress item and latent parameter map dependencies more precisely
jpritikin [Sat, 14 Dec 2013 12:04:30 +0000 (12:04 +0000)]
Express item and latent parameter map dependencies more precisely

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3008 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove unused variable decl
jpritikin [Thu, 12 Dec 2013 18:59:39 +0000 (18:59 +0000)]
Remove unused variable decl

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3007 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoConditionally compile NPSOL global variables
jpritikin [Thu, 12 Dec 2013 18:59:36 +0000 (18:59 +0000)]
Conditionally compile NPSOL global variables

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3006 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCsolnp_warnings removed v2
mzahery [Thu, 12 Dec 2013 16:07:20 +0000 (16:07 +0000)]
Csolnp_warnings removed v2

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3005 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCsolnp_warnings removed
mzahery [Thu, 12 Dec 2013 15:09:45 +0000 (15:09 +0000)]
Csolnp_warnings removed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3004 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReduce use of protect stack
jpritikin [Sat, 7 Dec 2013 16:56:14 +0000 (16:56 +0000)]
Reduce use of protect stack

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3003 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSuggest how to debug protect stack overflow
jpritikin [Sat, 7 Dec 2013 16:56:08 +0000 (16:56 +0000)]
Suggest how to debug protect stack overflow

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3002 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSplit SE calculation into separate Compute object
jpritikin [Sat, 7 Dec 2013 12:59:24 +0000 (12:59 +0000)]
Split SE calculation into separate Compute object

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3001 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMake No Sort Data option addition unique in state space expectations so duplicates...
mhunter [Sat, 7 Dec 2013 05:15:06 +0000 (05:15 +0000)]
Make No Sort Data option addition unique in state space expectations so duplicates do not get added.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3000 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCreate labels for special variable groups
jpritikin [Tue, 26 Nov 2013 00:21:50 +0000 (00:21 +0000)]
Create labels for special variable groups

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2999 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoInvertSymmetricIndef
jpritikin [Tue, 26 Nov 2013 00:21:47 +0000 (00:21 +0000)]
InvertSymmetricIndef

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2998 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp: warnings v2
mzahery [Fri, 22 Nov 2013 20:27:47 +0000 (20:27 +0000)]
Csolnp: warnings v2

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2997 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp: warnings v1
mzahery [Fri, 22 Nov 2013 20:22:06 +0000 (20:22 +0000)]
Csolnp: warnings v1

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2996 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPermit easy specification of the default optimizer in R code
jpritikin [Fri, 22 Nov 2013 18:57:12 +0000 (18:57 +0000)]
Permit easy specification of the default optimizer in R code

For example,

mxOption(NULL, "Default optimizer", "NPSOL")
mxOption(NULL, "Default optimizer", "CSOLNP")

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2995 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoomxImportFrontendState: commented lines 342-350
mzahery [Thu, 21 Nov 2013 08:30:45 +0000 (08:30 +0000)]
omxImportFrontendState: commented lines 342-350

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2994 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp: State space models
mzahery [Thu, 21 Nov 2013 08:27:02 +0000 (08:27 +0000)]
Csolnp: State space models

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2993 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDemonstrate how to compute the Fisher information matrix
jpritikin [Wed, 20 Nov 2013 10:57:58 +0000 (10:57 +0000)]
Demonstrate how to compute the Fisher information matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2992 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't warn if not all outcomes are represented in the data
jpritikin [Wed, 20 Nov 2013 10:57:52 +0000 (10:57 +0000)]
Don't warn if not all outcomes are represented in the data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2991 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix quadrature for two-tier models
jpritikin [Fri, 15 Nov 2013 20:06:14 +0000 (20:06 +0000)]
Fix quadrature for two-tier models

This bug only affects two-tier models with more than 1 primary
dimension. Bifactor models were unaffected.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2988 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd more examples from flexMIRT
jpritikin [Wed, 13 Nov 2013 19:29:29 +0000 (19:29 +0000)]
Add more examples from flexMIRT

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2985 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoGeneric ComputeEM with Ramsay (1975) acceleration
jpritikin [Wed, 13 Nov 2013 19:29:19 +0000 (19:29 +0000)]
Generic ComputeEM with Ramsay (1975) acceleration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2984 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSync with rpf
jpritikin [Wed, 13 Nov 2013 19:29:12 +0000 (19:29 +0000)]
Sync with rpf

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2983 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd matrix symmetric pos def inverse
jpritikin [Wed, 13 Nov 2013 19:29:09 +0000 (19:29 +0000)]
Add matrix symmetric pos def inverse

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2982 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoNote minor bug
jpritikin [Wed, 13 Nov 2013 19:29:05 +0000 (19:29 +0000)]
Note minor bug

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2981 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove starting value of state space example within bounds.
mhunter [Thu, 7 Nov 2013 16:00:26 +0000 (16:00 +0000)]
Move starting value of state space example within bounds.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2980 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoKeep parameters within bounds
jpritikin [Thu, 7 Nov 2013 15:53:20 +0000 (15:53 +0000)]
Keep parameters within bounds

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2979 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoWork around cran-check issues
jpritikin [Sun, 3 Nov 2013 17:39:53 +0000 (17:39 +0000)]
Work around cran-check issues

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2977 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix more documentation
jpritikin [Sun, 3 Nov 2013 17:39:48 +0000 (17:39 +0000)]
Fix more documentation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2976 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agohttp://openmx.psyc.virginia.edu/issue/2013/10/mxrename-fitted-model-objects-leaves...
jpritikin [Sat, 26 Oct 2013 00:14:26 +0000 (00:14 +0000)]
openmx.psyc.virginia.edu/issue/2013/10/mxrename-fitted-model-objects-leaves-mxconstraint-objects-unrenamed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2975 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove redundent and tricky matrix invert code
jpritikin [Sat, 26 Oct 2013 00:14:22 +0000 (00:14 +0000)]
Remove redundent and tricky matrix invert code

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2974 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMake MatrixInvert more generic
jpritikin [Fri, 25 Oct 2013 20:23:20 +0000 (20:23 +0000)]
Make MatrixInvert more generic

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2973 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused field from struct Matrix
jpritikin [Fri, 25 Oct 2013 19:52:06 +0000 (19:52 +0000)]
Remove unused field from struct Matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2972 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAvoid another copy of the currentState
jpritikin [Fri, 25 Oct 2013 19:52:03 +0000 (19:52 +0000)]
Avoid another copy of the currentState

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2971 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport info code in error
jpritikin [Thu, 24 Oct 2013 21:13:04 +0000 (21:13 +0000)]
Report info code in error

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2970 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd check for positive definite expected covariance matrix for state space expectations.
mhunter [Thu, 24 Oct 2013 15:45:38 +0000 (15:45 +0000)]
Add check for positive definite expected covariance matrix for state space expectations.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2969 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd more aliases
jpritikin [Thu, 24 Oct 2013 15:20:36 +0000 (15:20 +0000)]
Add more aliases

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2968 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove redundent test
jpritikin [Thu, 24 Oct 2013 10:14:05 +0000 (10:14 +0000)]
Remove redundent test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2966 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAddress serious compile warnings
jpritikin [Wed, 23 Oct 2013 20:42:58 +0000 (20:42 +0000)]
Address serious compile warnings

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2965 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDeadcode
jpritikin [Wed, 23 Oct 2013 20:42:57 +0000 (20:42 +0000)]
Deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2964 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTry again to plug small memory leak
jpritikin [Wed, 23 Oct 2013 20:42:55 +0000 (20:42 +0000)]
Try again to plug small memory leak

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2963 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Plug small memory leak"
jpritikin [Wed, 23 Oct 2013 18:12:57 +0000 (18:12 +0000)]
Revert "Plug small memory leak"

This reverts commit 10863fde80067f904669541b3d3b471e3086bbcd.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2962 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSync with rpf 0.16
jpritikin [Tue, 22 Oct 2013 16:52:00 +0000 (16:52 +0000)]
Sync with rpf 0.16

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2961 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPlug small memory leak
jpritikin [Tue, 22 Oct 2013 16:51:58 +0000 (16:51 +0000)]
Plug small memory leak

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2960 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: memory leaks v2
mzahery [Mon, 21 Oct 2013 21:07:34 +0000 (21:07 +0000)]
CSOLNP: memory leaks v2

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2959 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove some obsolete comments
jpritikin [Mon, 21 Oct 2013 14:27:16 +0000 (14:27 +0000)]
Remove some obsolete comments

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2958 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix deriv test
jpritikin [Mon, 21 Oct 2013 14:27:16 +0000 (14:27 +0000)]
Fix deriv test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2957 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoExamine accuracy of derivs
jpritikin [Sat, 19 Oct 2013 17:10:17 +0000 (17:10 +0000)]
Examine accuracy of derivs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2956 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReorg to adjust the tolerance for Ramsay damping
jpritikin [Sat, 19 Oct 2013 17:10:09 +0000 (17:10 +0000)]
Reorg to adjust the tolerance for Ramsay damping

It may makes no practical difference, but maybe it is the right thing to
do.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2955 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoExamine accuracy of derivs
jpritikin [Sat, 19 Oct 2013 17:10:07 +0000 (17:10 +0000)]
Examine accuracy of derivs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2954 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoIncrease precision of test
jpritikin [Sat, 19 Oct 2013 17:10:01 +0000 (17:10 +0000)]
Increase precision of test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2953 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd lots of doc aliases
jpritikin [Wed, 16 Oct 2013 20:25:58 +0000 (20:25 +0000)]
Add lots of doc aliases

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2952 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEmpty free list on both sides of omxInvokeCSOLNP
jpritikin [Wed, 16 Oct 2013 19:46:13 +0000 (19:46 +0000)]
Empty free list on both sides of omxInvokeCSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2951 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAvoid uninitialized memory reads for now; Mahsa, pls set inform sensibly
jpritikin [Wed, 16 Oct 2013 19:46:11 +0000 (19:46 +0000)]
Avoid uninitialized memory reads for now; Mahsa, pls set inform sensibly

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2950 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1