openmx:openmx.git
4 years agoCSOLNP: memory leaks solved
mzahery [Thu, 3 Apr 2014 16:02:06 +0000 (16:02 +0000)]
CSOLNP: memory leaks solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3265 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoHook up recordIterationError for FIML
jpritikin [Thu, 3 Apr 2014 14:55:03 +0000 (14:55 +0000)]
Hook up recordIterationError for FIML

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3264 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove lock from FitContext::resetIterationError
jpritikin [Thu, 3 Apr 2014 14:55:03 +0000 (14:55 +0000)]
Remove lock from FitContext::resetIterationError

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3263 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Restore now passing test"
jpritikin [Thu, 3 Apr 2014 14:24:13 +0000 (14:24 +0000)]
Revert "Restore now passing test"

This reverts commit 44c86416d73cfd3ae92c1f47a587ddda0afae0f9.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3262 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd FitContext::recordIterationError
jpritikin [Thu, 3 Apr 2014 14:13:11 +0000 (14:13 +0000)]
Add FitContext::recordIterationError

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3261 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRestore now passing test
jpritikin [Thu, 3 Apr 2014 08:50:16 +0000 (08:50 +0000)]
Restore now passing test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3260 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: memory leaks in omxCSOLNPConfidenceIntervals function solved
mzahery [Thu, 3 Apr 2014 03:56:45 +0000 (03:56 +0000)]
CSOLNP: memory leaks in omxCSOLNPConfidenceIntervals function solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3259 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: prints changed to mxLog
mzahery [Thu, 3 Apr 2014 03:53:38 +0000 (03:53 +0000)]
CSOLNP: prints changed to mxLog

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3258 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDemote some errors to debug output
jpritikin [Thu, 3 Apr 2014 01:00:24 +0000 (01:00 +0000)]
Demote some errors to debug output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3257 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Development"
jpritikin [Wed, 2 Apr 2014 10:35:41 +0000 (10:35 +0000)]
Revert "Development"

This reverts commit da6d9eadfb220fad7e533140d0e0ad21638fc9dc.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3256 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCope with too many errors
jpritikin [Wed, 2 Apr 2014 10:35:22 +0000 (10:35 +0000)]
Cope with too many errors

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3255 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDevelopment
jpritikin [Wed, 2 Apr 2014 10:35:20 +0000 (10:35 +0000)]
Development

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3254 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRelax tolerance for CSOLNP
jpritikin [Wed, 2 Apr 2014 10:17:34 +0000 (10:17 +0000)]
Relax tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3253 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp: some prints removed
mzahery [Wed, 2 Apr 2014 04:51:16 +0000 (04:51 +0000)]
Csolnp: some prints removed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3252 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEnumerate errors if there is more than one
jpritikin [Wed, 2 Apr 2014 00:25:34 +0000 (00:25 +0000)]
Enumerate errors if there is more than one

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3251 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRelax tolerance for CSOLNP
jpritikin [Wed, 2 Apr 2014 00:01:30 +0000 (00:01 +0000)]
Relax tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3250 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRestore SVN# in version (part 2)
jpritikin [Tue, 1 Apr 2014 19:34:24 +0000 (19:34 +0000)]
Restore SVN# in version (part 2)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3249 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRestore SVN# in version
jpritikin [Tue, 1 Apr 2014 16:58:17 +0000 (16:58 +0000)]
Restore SVN# in version

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3248 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMake CSOLNP the default optimizer
jpritikin [Tue, 1 Apr 2014 10:25:30 +0000 (10:25 +0000)]
Make CSOLNP the default optimizer

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3247 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP doc added: not complete
mzahery [Tue, 1 Apr 2014 03:06:48 +0000 (03:06 +0000)]
CSOLNP doc added: not complete

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3246 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRelax tolerance for CSOLNP
jpritikin [Tue, 1 Apr 2014 00:10:54 +0000 (00:10 +0000)]
Relax tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3245 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd Hessian information matrix for Normal expectations
jpritikin [Mon, 31 Mar 2014 17:18:29 +0000 (17:18 +0000)]
Add Hessian information matrix for Normal expectations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3244 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport all the errors instead of only the most recent one
jpritikin [Mon, 31 Mar 2014 17:18:28 +0000 (17:18 +0000)]
Report all the errors instead of only the most recent one

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3243 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCan fail due to CSOLNP valgrind issues
jpritikin [Mon, 31 Mar 2014 17:18:27 +0000 (17:18 +0000)]
Can fail due to CSOLNP valgrind issues

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3242 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRelax tolerance for CSOLNP
jpritikin [Sun, 30 Mar 2014 11:33:51 +0000 (11:33 +0000)]
Relax tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3241 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport correct Hessian
jpritikin [Sun, 30 Mar 2014 11:25:43 +0000 (11:25 +0000)]
Report correct Hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3240 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: Hessian returned
mzahery [Sat, 29 Mar 2014 23:17:55 +0000 (23:17 +0000)]
CSOLNP: Hessian returned

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3239 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: matrix inverse function changed
mzahery [Sat, 29 Mar 2014 22:58:28 +0000 (22:58 +0000)]
CSOLNP: matrix inverse function changed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3238 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUse mxOption mvn settings for omxMnor & omxAllInt Algebra ops
jpritikin [Sat, 29 Mar 2014 21:22:52 +0000 (21:22 +0000)]
Use mxOption mvn settings for omxMnor & omxAllInt Algebra ops

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3237 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRun the options list through omxCallAlgebra
jpritikin [Sat, 29 Mar 2014 21:22:48 +0000 (21:22 +0000)]
Run the options list through omxCallAlgebra

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3236 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Use mxOption mvn settings for omxMnor & omxAllInt Algebra ops"
jpritikin [Sat, 29 Mar 2014 18:38:12 +0000 (18:38 +0000)]
Revert "Use mxOption mvn settings for omxMnor & omxAllInt Algebra ops"

This reverts commit abd1785b3779b82ee377047c07c62ba3b238f610.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3235 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUse mxOption mvn settings for omxMnor & omxAllInt Algebra ops
jpritikin [Sat, 29 Mar 2014 17:25:09 +0000 (17:25 +0000)]
Use mxOption mvn settings for omxMnor & omxAllInt Algebra ops

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3234 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoBetter if LISREL works
jpritikin [Sat, 29 Mar 2014 16:08:07 +0000 (16:08 +0000)]
Better if LISREL works

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3233 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAnother bugfix for @-to-$ transition.
tbrick [Sat, 29 Mar 2014 14:49:52 +0000 (14:49 +0000)]
Another bugfix for @-to-$ transition.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3232 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoBugfix for @-to-$ transition.
tbrick [Sat, 29 Mar 2014 14:49:27 +0000 (14:49 +0000)]
Bugfix for @-to-$ transition.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3231 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdded $ accessors to several classes. Still need to change examples and demos, but...
tbrick [Sat, 29 Mar 2014 14:10:52 +0000 (14:10 +0000)]
Added $ accessors to several classes.  Still need to change examples and demos, but from here on nobody should use @-access, only himBHaccess.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3230 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMoved seg-faulting LISREL tests to models/failing.
tbrick [Sat, 29 Mar 2014 13:38:48 +0000 (13:38 +0000)]
Moved seg-faulting LISREL tests to models/failing.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3229 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReduce tolerance for CSOLNP
jpritikin [Sat, 29 Mar 2014 12:06:49 +0000 (12:06 +0000)]
Reduce tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3228 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove to failing until CSOLNP valgrind errors are addressed
jpritikin [Sat, 29 Mar 2014 12:06:48 +0000 (12:06 +0000)]
Move to failing until CSOLNP valgrind errors are addressed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3227 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSwitch line endings back to unix style
jpritikin [Fri, 28 Mar 2014 21:24:41 +0000 (21:24 +0000)]
Switch line endings back to unix style

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3226 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMixture Doc Pages
restabrook [Fri, 28 Mar 2014 18:14:15 +0000 (18:14 +0000)]
Mixture Doc Pages

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3225 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPlug possible memory leak in LISREL expectation
mhunter [Fri, 28 Mar 2014 17:22:43 +0000 (17:22 +0000)]
Plug possible memory leak in LISREL expectation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3224 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDocumentation-related tweaks to roxygen-related parts of .R files.
rkirkpatrick [Thu, 27 Mar 2014 22:13:40 +0000 (22:13 +0000)]
Documentation-related tweaks to roxygen-related parts of .R files.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3223 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFurther tweaks to .Rd files.
rkirkpatrick [Thu, 27 Mar 2014 22:10:58 +0000 (22:10 +0000)]
Further tweaks to .Rd files.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3222 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFree more matrices from the state space expectation.
mhunter [Thu, 27 Mar 2014 19:55:43 +0000 (19:55 +0000)]
Free more matrices from the state space expectation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3221 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUndoing my change to line 80 of mxCI.Rd .
rkirkpatrick [Thu, 27 Mar 2014 19:36:34 +0000 (19:36 +0000)]
Undoing my change to line 80 of mxCI.Rd .

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3220 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoJoshua found the new bug that was killing WLS. The WLS fit function freed the weight...
mhunter [Thu, 27 Mar 2014 19:08:17 +0000 (19:08 +0000)]
Joshua found the new bug that was killing WLS.  The WLS fit function freed the weight matrix (i.e. the data acov matrix) so it caused a problem when omxState tried to free the data that was already gone.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3219 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTweaks to .Rd files based on cran-check results.
rkirkpatrick [Thu, 27 Mar 2014 18:51:44 +0000 (18:51 +0000)]
Tweaks to .Rd files based on cran-check results.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3218 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCleaning failing models: remove working model
mhunter [Thu, 27 Mar 2014 17:23:12 +0000 (17:23 +0000)]
Cleaning failing models: remove working model

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3217 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCleaning failing models
mhunter [Thu, 27 Mar 2014 17:22:15 +0000 (17:22 +0000)]
Cleaning failing models

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3216 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFailing WLS saturated test.
mhunter [Thu, 27 Mar 2014 15:54:13 +0000 (15:54 +0000)]
Failing WLS saturated test.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3215 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoWLS acov matrices can have zero but not negative eigenvalues.
mhunter [Thu, 27 Mar 2014 15:50:14 +0000 (15:50 +0000)]
WLS acov matrices can have zero but not negative eigenvalues.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3214 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDocument mvn integration parameters
jpritikin [Thu, 27 Mar 2014 15:04:45 +0000 (15:04 +0000)]
Document mvn integration parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3213 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReduce tolerances slightly for CSOLNP
jpritikin [Thu, 27 Mar 2014 14:42:35 +0000 (14:42 +0000)]
Reduce tolerances slightly for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3212 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "csolnp: small changes"
jpritikin [Thu, 27 Mar 2014 10:09:58 +0000 (10:09 +0000)]
Revert "csolnp: small changes"

This reverts commit 30fb1d4719a978114de5cd72897acb1bec2573fe.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3211 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agocsolnp: small changes
mzahery [Thu, 27 Mar 2014 06:19:35 +0000 (06:19 +0000)]
csolnp: small changes

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3210 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agomxCI should not interfere with SEs (or fit)
jpritikin [Thu, 27 Mar 2014 00:00:54 +0000 (00:00 +0000)]
mxCI should not interfere with SEs (or fit)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3209 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMake S-EM asymmetric Hessian available in debug slot
jpritikin [Wed, 26 Mar 2014 20:08:29 +0000 (20:08 +0000)]
Make S-EM asymmetric Hessian available in debug slot

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3208 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd dimnames to @output$hessian and @output$ihessian
jpritikin [Wed, 26 Mar 2014 11:10:27 +0000 (11:10 +0000)]
Add dimnames to @output$hessian and @output$ihessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3207 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix omxMatrix memory model
jpritikin [Mon, 24 Mar 2014 21:18:34 +0000 (21:18 +0000)]
Fix omxMatrix memory model

There are 2 kinds of omxMatrix. omxMatrix with hasMatrixNumber are
pointed to by matrixList or algebraList. These matrices are freed by
omxState. All other omxMatrix, typically created with omxInitMatrix,
must be freed with omxFreeMatrix. Simple.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3206 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEliminate a few more memory leaks
jpritikin [Mon, 24 Mar 2014 19:52:39 +0000 (19:52 +0000)]
Eliminate a few more memory leaks

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3205 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPlug HessianBlock memory leaks
jpritikin [Mon, 24 Mar 2014 13:13:53 +0000 (13:13 +0000)]
Plug HessianBlock memory leaks

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3204 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemember how many cores we detected
jpritikin [Mon, 24 Mar 2014 01:16:19 +0000 (01:16 +0000)]
Remember how many cores we detected

The main motivation for this patch is to avoid a strange error from
repeatedly calling popen: probable reason 'Cannot allocate memory'. I'm
not happy to add a dependency on digest, but hashing the function
arguments with digest is an elegant solution.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3203 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAddress memory corruption in ComputeEM debug output
jpritikin [Mon, 24 Mar 2014 01:16:13 +0000 (01:16 +0000)]
Address memory corruption in ComputeEM debug output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3202 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoChange paramInfo.type from integer to string
jpritikin [Sat, 22 Mar 2014 22:49:00 +0000 (22:49 +0000)]
Change paramInfo.type from integer to string

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3201 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agomxFitFunctionAlgebra derivatives
jpritikin [Sat, 22 Mar 2014 22:48:54 +0000 (22:48 +0000)]
mxFitFunctionAlgebra derivatives

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3200 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix loop indexing for IFA derivs
jpritikin [Sat, 22 Mar 2014 22:48:19 +0000 (22:48 +0000)]
Fix loop indexing for IFA derivs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3199 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDisentangle Ramsay1975 caution settings (maybe improves dynamic behavior)
jpritikin [Sat, 22 Mar 2014 22:48:17 +0000 (22:48 +0000)]
Disentangle Ramsay1975 caution settings (maybe improves dynamic behavior)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3198 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMake compile objects depend on the compile flags
jpritikin [Sat, 22 Mar 2014 22:48:11 +0000 (22:48 +0000)]
Make compile objects depend on the compile flags

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3197 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoBetter names for mvn parameters
jpritikin [Sat, 22 Mar 2014 17:56:09 +0000 (17:56 +0000)]
Better names for mvn parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3196 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix mxCI for a vector of parameter names; add test
jpritikin [Sat, 22 Mar 2014 17:56:07 +0000 (17:56 +0000)]
Fix mxCI for a vector of parameter names; add test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3195 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove diagnostics
jpritikin [Sat, 22 Mar 2014 17:56:03 +0000 (17:56 +0000)]
Improve diagnostics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3194 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRestore some support for row major storage
jpritikin [Sat, 22 Mar 2014 14:29:24 +0000 (14:29 +0000)]
Restore some support for row major storage

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3193 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAvoid needless compiles
jpritikin [Sat, 22 Mar 2014 14:29:22 +0000 (14:29 +0000)]
Avoid needless compiles

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3192 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove a bit more automatic version stamp stuff
jpritikin [Sat, 22 Mar 2014 09:55:17 +0000 (09:55 +0000)]
Remove a bit more automatic version stamp stuff

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3191 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoHook up numerical integration precision parameters
jpritikin [Sat, 22 Mar 2014 09:50:46 +0000 (09:50 +0000)]
Hook up numerical integration precision parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3190 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove automatic version stamping
yang [Fri, 21 Mar 2014 21:25:58 +0000 (21:25 +0000)]
Remove automatic version stamping

We have accidentally messed up the version too many times. Let's try
managing the version manually for now.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3189 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove detection of CPU architecture
yang [Fri, 21 Mar 2014 21:25:58 +0000 (21:25 +0000)]
Improve detection of CPU architecture

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3188 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "test from yang"
yang [Fri, 21 Mar 2014 21:03:42 +0000 (21:03 +0000)]
Revert "test from yang"

This reverts commit bd1d3d201abe126da9d09cc435e3186361088f41.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3187 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agotest from yang
yang [Fri, 21 Mar 2014 21:01:51 +0000 (21:01 +0000)]
test from yang

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3186 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFor WLS when flattening cov, do it to upper triangle BY ROW so it matches the variabl...
mhunter [Fri, 21 Mar 2014 20:36:49 +0000 (20:36 +0000)]
For WLS when flattening cov, do it to upper triangle BY ROW so it matches the variable ordering of the lower triangle by column.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3185 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMinor bug fix in saturated model generator
mhunter [Fri, 21 Mar 2014 18:26:46 +0000 (18:26 +0000)]
Minor bug fix in saturated model generator

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3182 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReset fake version back to zero
jpritikin [Fri, 21 Mar 2014 18:20:56 +0000 (18:20 +0000)]
Reset fake version back to zero

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3181 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTemporarily quarentine test failing with CSOLNP
jpritikin [Fri, 21 Mar 2014 18:20:54 +0000 (18:20 +0000)]
Temporarily quarentine test failing with CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3180 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "inversion function changed, gradient & Hessian returned, some code cleanings"
jpritikin [Fri, 21 Mar 2014 18:20:49 +0000 (18:20 +0000)]
Revert "inversion function changed, gradient & Hessian returned, some code cleanings"

This reverts commit 91e3dd6484120ed9b53f02c6b148bc246379f9dc.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3179 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoHelp gcc issue more accurate warnings
jpritikin [Fri, 21 Mar 2014 18:06:39 +0000 (18:06 +0000)]
Help gcc issue more accurate warnings

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3178 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFixed WLS expected thresholds processing (i.e. for data of type acov)
mhunter [Fri, 21 Mar 2014 17:35:56 +0000 (17:35 +0000)]
Fixed WLS expected thresholds processing (i.e. for data of type acov)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3177 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTest both NPSOL and CSOLNP if both are available
jpritikin [Fri, 21 Mar 2014 14:00:40 +0000 (14:00 +0000)]
Test both NPSOL and CSOLNP if both are available

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3176 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix uninitialized memory read in multivariate normal information matrix
jpritikin [Fri, 21 Mar 2014 13:19:25 +0000 (13:19 +0000)]
Fix uninitialized memory read in multivariate normal information matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3175 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEnsure save-gcno is part of all target
jpritikin [Fri, 21 Mar 2014 13:19:24 +0000 (13:19 +0000)]
Ensure save-gcno is part of all target

I'm not sure why this isn't necessary.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3174 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTwo more Users Guide pages updated for e-f change
mhunter [Thu, 20 Mar 2014 21:41:06 +0000 (21:41 +0000)]
Two more Users Guide pages updated for e-f change

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3173 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFinish killing %lu related debugging compiler warnings.
mhunter [Thu, 20 Mar 2014 20:20:20 +0000 (20:20 +0000)]
Finish killing %lu related debugging compiler warnings.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3172 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMore expectation-fit Users Guide changes
mhunter [Thu, 20 Mar 2014 18:06:47 +0000 (18:06 +0000)]
More expectation-fit Users Guide changes

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3171 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoOmit tarball busy work from 'make install' similar to 'make cran-install'
jpritikin [Thu, 20 Mar 2014 17:56:09 +0000 (17:56 +0000)]
Omit tarball busy work from 'make install' similar to 'make cran-install'

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3170 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPull libnpsol.a from our website (linux only, so far)
jpritikin [Thu, 20 Mar 2014 17:56:08 +0000 (17:56 +0000)]
Pull libnpsol.a from our website (linux only, so far)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3169 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUsers Guide fit-expectation changes
mhunter [Thu, 20 Mar 2014 17:50:02 +0000 (17:50 +0000)]
Users Guide fit-expectation changes

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3168 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUsers Guide Row FIML Fit changes
mhunter [Thu, 20 Mar 2014 17:32:00 +0000 (17:32 +0000)]
Users Guide Row FIML Fit changes

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3167 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate Users Guide pages A through F for the expectation-fit change.
mhunter [Thu, 20 Mar 2014 16:49:28 +0000 (16:49 +0000)]
Update Users Guide pages A through F for the expectation-fit change.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3166 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoHint the correct way to customize the compiler/compiler options
jpritikin [Thu, 20 Mar 2014 15:28:37 +0000 (15:28 +0000)]
Hint the correct way to customize the compiler/compiler options

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3165 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove HessianTest* to failing
jpritikin [Thu, 20 Mar 2014 13:20:48 +0000 (13:20 +0000)]
Move HessianTest* to failing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3164 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1