openmx:openmx.git
3 years agoAdd option to checkpoint every evaluation
jpritikin [Sat, 3 May 2014 12:48:23 +0000 (12:48 +0000)]
Add option to checkpoint every evaluation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3411 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRewrite MxCompute pretty-printing code
jpritikin [Sat, 3 May 2014 09:31:13 +0000 (09:31 +0000)]
Rewrite MxCompute pretty-printing code

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3410 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTake abs(ev) when inverting Hessian (suggested by Timo von Oertzen)
jpritikin [Sat, 3 May 2014 09:31:05 +0000 (09:31 +0000)]
Take abs(ev) when inverting Hessian (suggested by Timo von Oertzen)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3409 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMatch item and data column names
jpritikin [Sat, 3 May 2014 09:30:55 +0000 (09:30 +0000)]
Match item and data column names

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3408 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTidy previous commit
jpritikin [Sat, 3 May 2014 02:55:40 +0000 (02:55 +0000)]
Tidy previous commit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3407 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoBug fix the number of observed statistics in non-IFA models with raw data. This...
mhunter [Fri, 2 May 2014 19:59:35 +0000 (19:59 +0000)]
Bug fix the number of observed statistics in non-IFA models with raw data.  This may break Obs Stats in IFA models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3406 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix typo in preview commit
jpritikin [Fri, 2 May 2014 13:36:35 +0000 (13:36 +0000)]
Fix typo in preview commit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3405 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSparse invert, handle the non-overlapping case
jpritikin [Fri, 2 May 2014 13:03:31 +0000 (13:03 +0000)]
Sparse invert, handle the non-overlapping case

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3404 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoIn addition to the mxOption, let mxData(sort=FALSE) request unsorted data
jpritikin [Fri, 2 May 2014 13:03:11 +0000 (13:03 +0000)]
In addition to the mxOption, let mxData(sort=FALSE) request unsorted data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3403 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd a git bisect script
jpritikin [Fri, 2 May 2014 07:57:08 +0000 (07:57 +0000)]
Add a git bisect script

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3402 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoShow optimizer engine
jpritikin [Fri, 2 May 2014 07:52:25 +0000 (07:52 +0000)]
Show optimizer engine

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3401 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "Fix Observed Statistics regression"
jpritikin [Fri, 2 May 2014 06:49:49 +0000 (06:49 +0000)]
Revert "Fix Observed Statistics regression"

This is the problem but requires a few more fixes.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3400 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix Observed Statistics regression
jpritikin [Fri, 2 May 2014 06:43:59 +0000 (06:43 +0000)]
Fix Observed Statistics regression

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3399 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoShow MxCompute plan in summary
jpritikin [Fri, 2 May 2014 06:43:52 +0000 (06:43 +0000)]
Show MxCompute plan in summary

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3398 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImprove doc for mxCI
jpritikin [Fri, 2 May 2014 01:44:56 +0000 (01:44 +0000)]
Improve doc for mxCI

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3397 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDrop omxPresortData idea
jpritikin [Thu, 1 May 2014 14:29:54 +0000 (14:29 +0000)]
Drop omxPresortData idea

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3396 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCheckpoint correct fit in Newton-Raphson
jpritikin [Thu, 1 May 2014 06:58:13 +0000 (06:58 +0000)]
Checkpoint correct fit in Newton-Raphson

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3395 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMove test to passing
jpritikin [Wed, 30 Apr 2014 02:57:25 +0000 (02:57 +0000)]
Move test to passing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3394 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Problem with simplestCI.R solved
mzahery [Tue, 29 Apr 2014 15:14:46 +0000 (15:14 +0000)]
CSOLNP: Problem with simplestCI.R solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3393 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFixed bug where mxOption 'Default optimizer', and other options as well, get overwrit...
jpritikin [Tue, 29 Apr 2014 09:07:57 +0000 (09:07 +0000)]
Fixed bug where mxOption 'Default optimizer', and other options as well, get overwritten to the global defaults despite the user having set them to be different from global defaults in the model being run.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3392 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix bug in "mxOption without a value to show the current setting"
jpritikin [Tue, 29 Apr 2014 09:07:50 +0000 (09:07 +0000)]
Fix bug in "mxOption without a value to show the current setting"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3391 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "Fixed bug where mxOption 'Default optimizer', and other options as well,...
jpritikin [Tue, 29 Apr 2014 08:34:43 +0000 (08:34 +0000)]
Revert "Fixed bug where mxOption 'Default optimizer', and other options as well, get overwritten to the global defaults despite the user having set them to be different from global defaults in the model being run."

This "fix" breaks the test suite. Can you try again and add some tests
to ensure that you obtain the desired behavior?

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3390 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFixed bug where mxOption 'Default optimizer', and other options as well, get overwrit...
rkirkpatrick [Mon, 28 Apr 2014 16:54:18 +0000 (16:54 +0000)]
Fixed bug where mxOption 'Default optimizer', and other options as well, get overwritten to the global defaults despite the user having set them to be different from global defaults in the model being run.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3389 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agologLik for mxModel (contributed by Andreas Brandmaier)
jpritikin [Mon, 28 Apr 2014 12:10:33 +0000 (12:10 +0000)]
logLik for mxModel (contributed by Andreas Brandmaier)

See http://openmx.psyc.virginia.edu/thread/931

This should probably be better integrated with mxSummary, but I'm adding
it now just to get a rough draft checked in.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3388 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoIgnore non-convergence in ComputeEM M-step
jpritikin [Mon, 28 Apr 2014 12:10:24 +0000 (12:10 +0000)]
Ignore non-convergence in ComputeEM M-step

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3387 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agomxOption without a value to show the current setting
jpritikin [Mon, 28 Apr 2014 12:10:17 +0000 (12:10 +0000)]
mxOption without a value to show the current setting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3386 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoForce a positive semidefinite covariance matrix
jpritikin [Mon, 28 Apr 2014 12:10:06 +0000 (12:10 +0000)]
Force a positive semidefinite covariance matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3385 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoImprove diagnostics
jpritikin [Mon, 28 Apr 2014 12:09:58 +0000 (12:09 +0000)]
Improve diagnostics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3384 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoomxPresortData
jpritikin [Mon, 28 Apr 2014 12:09:49 +0000 (12:09 +0000)]
omxPresortData

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3383 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMove omxData to a C++ object
jpritikin [Mon, 28 Apr 2014 12:09:40 +0000 (12:09 +0000)]
Move omxData to a C++ object

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3382 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDemand dimnames for the prior distribution
jpritikin [Mon, 28 Apr 2014 12:09:31 +0000 (12:09 +0000)]
Demand dimnames for the prior distribution

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3381 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCoax summary to work with dynamic data
jpritikin [Mon, 28 Apr 2014 12:09:08 +0000 (12:09 +0000)]
Coax summary to work with dynamic data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3380 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDelete unused variable
jpritikin [Mon, 28 Apr 2014 12:08:53 +0000 (12:08 +0000)]
Delete unused variable

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3379 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd failing one-sided CI test
jpritikin [Mon, 28 Apr 2014 10:37:36 +0000 (10:37 +0000)]
Add failing one-sided CI test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3378 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoInline omxPopulateConfidenceIntervals
jpritikin [Mon, 28 Apr 2014 10:37:24 +0000 (10:37 +0000)]
Inline omxPopulateConfidenceIntervals

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3377 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPlace likelihood-based CI code into a separate MxCompute step
jpritikin [Mon, 28 Apr 2014 10:37:16 +0000 (10:37 +0000)]
Place likelihood-based CI code into a separate MxCompute step

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3376 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd test for fitting a latent distribution with fixed item parameters
jpritikin [Mon, 28 Apr 2014 10:37:03 +0000 (10:37 +0000)]
Add test for fitting a latent distribution with fixed item parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3375 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdjust log levels
jpritikin [Mon, 28 Apr 2014 10:36:54 +0000 (10:36 +0000)]
Adjust log levels

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3374 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd rownames to standardErrors
jpritikin [Mon, 28 Apr 2014 10:36:46 +0000 (10:36 +0000)]
Add rownames to standardErrors

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3373 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMoved test to failing, as it fails under the most recent revision.
rkirkpatrick [Thu, 24 Apr 2014 13:38:16 +0000 (13:38 +0000)]
Moved test to failing, as it fails under the most recent revision.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3372 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdded man page for mxThreshold and one factor demo
restabrook [Thu, 24 Apr 2014 03:59:48 +0000 (03:59 +0000)]
Added man page for mxThreshold and one factor demo

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3371 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdded man page for mxThreshold and one factor demo
restabrook [Thu, 24 Apr 2014 03:58:49 +0000 (03:58 +0000)]
Added man page for mxThreshold and one factor demo

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3370 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAs discussed at last week's meeting, added a test to models/passing to check that...
rkirkpatrick [Wed, 23 Apr 2014 17:09:25 +0000 (17:09 +0000)]
As discussed at last week's meeting, added a test to models/passing to check that both NPSOL and CSOLNP throw Code Red when indeed they both should.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3369 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDo not resetDataSortingFlags
jpritikin [Mon, 21 Apr 2014 19:55:42 +0000 (19:55 +0000)]
Do not resetDataSortingFlags

I hope this change will not break backward compatibility. If the data is
sorted, why do we need to mark it unsorted after mxRun? Sorting it again
should obtain the same result as not sorting it again.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3368 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove deadcode from failed experiment
jpritikin [Mon, 21 Apr 2014 19:55:41 +0000 (19:55 +0000)]
Remove deadcode from failed experiment

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3367 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: taking care of general warnings
mzahery [Mon, 21 Apr 2014 19:10:58 +0000 (19:10 +0000)]
CSOLNP: taking care of general warnings

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3366 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: warnings about convergence solved
mzahery [Mon, 21 Apr 2014 03:21:31 +0000 (03:21 +0000)]
CSOLNP: warnings about convergence solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3365 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCan omit initial fit computation after the first iteration
jpritikin [Sat, 19 Apr 2014 14:20:17 +0000 (14:20 +0000)]
Can omit initial fit computation after the first iteration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3364 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd some args for control of NA behavior
jpritikin [Sat, 19 Apr 2014 14:20:12 +0000 (14:20 +0000)]
Add some args for control of NA behavior

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3363 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRandom number generation changed from R-2.14 vs later versions
jpritikin [Fri, 18 Apr 2014 20:35:04 +0000 (20:35 +0000)]
Random number generation changed from R-2.14 vs later versions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3362 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSwitch from MASS::mvrnorm to mvtnorm::rmvnorm
jpritikin [Fri, 18 Apr 2014 10:19:52 +0000 (10:19 +0000)]
Switch from MASS::mvrnorm to mvtnorm::rmvnorm

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3361 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove unused arguments from omxRaiseError, omxRaiseErrorf
jpritikin [Thu, 17 Apr 2014 15:43:03 +0000 (15:43 +0000)]
Remove unused arguments from omxRaiseError, omxRaiseErrorf

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3360 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove unused argument from omxResizeMatrix
jpritikin [Thu, 17 Apr 2014 15:43:01 +0000 (15:43 +0000)]
Remove unused argument from omxResizeMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3359 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove irrelevant computation from test
jpritikin [Thu, 17 Apr 2014 14:31:20 +0000 (14:31 +0000)]
Remove irrelevant computation from test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3358 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoLet roxygen handle OpenMx.Rd
jpritikin [Wed, 16 Apr 2014 19:35:39 +0000 (19:35 +0000)]
Let roxygen handle OpenMx.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3357 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert Tim Bates' disasterous manual changes (pls try again)
jpritikin [Wed, 16 Apr 2014 19:32:50 +0000 (19:32 +0000)]
Revert Tim Bates' disasterous manual changes (pls try again)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3356 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEval the fit function before fitting the model
jpritikin [Wed, 16 Apr 2014 19:16:27 +0000 (19:16 +0000)]
Eval the fit function before fitting the model

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3355 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEnable colored diagnostics for gcc 4.9
jpritikin [Wed, 16 Apr 2014 13:58:37 +0000 (13:58 +0000)]
Enable colored diagnostics for gcc 4.9

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3354 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdding back manually built help files
tbates [Tue, 15 Apr 2014 15:47:22 +0000 (15:47 +0000)]
Adding back manually built help files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3353 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdding back manually built help files
tbates [Tue, 15 Apr 2014 14:36:13 +0000 (14:36 +0000)]
Adding back manually built help files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3352 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDeleting last .Rd file and added <svn propset svn:ignore "*.Rd" .> to ignore Rd...
tbates [Tue, 15 Apr 2014 00:57:54 +0000 (00:57 +0000)]
Deleting last .Rd file and added <svn propset svn:ignore "*.Rd" .>  to ignore Rd files in future

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3351 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemoving .Rd files (people think these shouldn't be repo'd as they can be built)
tbates [Tue, 15 Apr 2014 00:53:30 +0000 (00:53 +0000)]
Removing .Rd files (people think these shouldn't be repo'd as they can be built)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3350 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agouse mxComputeSequence to compute output$hessian
tbates [Mon, 14 Apr 2014 19:09:36 +0000 (19:09 +0000)]
use mxComputeSequence to compute output$hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3349 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoseveral Rd files now built with roxygen
tbates [Mon, 14 Apr 2014 18:41:07 +0000 (18:41 +0000)]
several Rd files now built with roxygen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3348 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoupdating comments and examples to use $ rather than @ (and @@ where used in #' commen...
tbates [Mon, 14 Apr 2014 18:40:27 +0000 (18:40 +0000)]
updating comments and examples to use $ rather than @ (and @@ where used in #' comments. Documents ?OpenMx in zzz.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3347 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoHandle omxRemoveRowsAndColumns for row-major order; add tests
jpritikin [Sun, 13 Apr 2014 23:24:30 +0000 (23:24 +0000)]
Handle omxRemoveRowsAndColumns for row-major order; add tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3346 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoomxAliasMatrix, omxResetAliasedMatrix are essentially omxCopyMatrix
jpritikin [Sun, 13 Apr 2014 22:15:18 +0000 (22:15 +0000)]
omxAliasMatrix, omxResetAliasedMatrix are essentially omxCopyMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3345 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoProhibit omxResetAliasedMatrix on non-aliased matrices
jpritikin [Sun, 13 Apr 2014 22:15:16 +0000 (22:15 +0000)]
Prohibit omxResetAliasedMatrix on non-aliased matrices

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3344 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agochanges to doc files
hmaes [Sun, 13 Apr 2014 21:24:55 +0000 (21:24 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3343 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoBug fixes to conformability checks in SSM, and SSM expectation arguments allowed...
mhunter [Sun, 13 Apr 2014 19:40:00 +0000 (19:40 +0000)]
Bug fixes to conformability checks in SSM, and SSM expectation arguments allowed to be the result of algebras.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3342 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSimplify implementation of aliased matrices
jpritikin [Sun, 13 Apr 2014 19:17:36 +0000 (19:17 +0000)]
Simplify implementation of aliased matrices

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3341 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "Temporarily remove conformability checking in SSM and add some debugging...
jpritikin [Sun, 13 Apr 2014 19:17:32 +0000 (19:17 +0000)]
Revert "Temporarily remove conformability checking in SSM and add some debugging in SSM."

This reverts commit 928803c2fb96d9e31f32ad4c68a516c43a4250eb.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3340 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRevert "Development"
jpritikin [Sun, 13 Apr 2014 00:29:43 +0000 (00:29 +0000)]
Revert "Development"

This reverts commit 8526380cd999593b11634f2a0e8c54d9b636aa0f.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3339 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix memory corruption in omxResetAliasedMatrix
jpritikin [Sun, 13 Apr 2014 00:28:16 +0000 (00:28 +0000)]
Fix memory corruption in omxResetAliasedMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3338 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDevelopment
jpritikin [Sun, 13 Apr 2014 00:28:15 +0000 (00:28 +0000)]
Development

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3337 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTidy mxComputeEM user interface, add doc
jpritikin [Sat, 12 Apr 2014 18:55:45 +0000 (18:55 +0000)]
Tidy mxComputeEM user interface, add doc

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3336 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove the last @
jpritikin [Sat, 12 Apr 2014 18:55:42 +0000 (18:55 +0000)]
Remove the last @

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3335 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPlace BA81 expectation in observed mode by default
jpritikin [Sat, 12 Apr 2014 18:55:39 +0000 (18:55 +0000)]
Place BA81 expectation in observed mode by default

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3334 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTemporarily remove conformability checking in SSM and add some debugging in SSM.
mhunter [Sat, 12 Apr 2014 14:22:10 +0000 (14:22 +0000)]
Temporarily remove conformability checking in SSM and add some debugging in SSM.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3333 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoProhibit mxFitFunctionMultigroup with no groups
jpritikin [Sat, 12 Apr 2014 12:15:33 +0000 (12:15 +0000)]
Prohibit mxFitFunctionMultigroup with no groups

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3332 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove old Mx
jpritikin [Sat, 12 Apr 2014 11:11:12 +0000 (11:11 +0000)]
Remove old Mx

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3331 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove unused slots
jpritikin [Sat, 12 Apr 2014 10:05:11 +0000 (10:05 +0000)]
Remove unused slots

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3330 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoConvert paste0 into paste for R 2.14
jpritikin [Fri, 11 Apr 2014 22:34:00 +0000 (22:34 +0000)]
Convert paste0 into paste for R 2.14

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3329 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRename observed.fit to observedFit and require a name instead of MxCompute
jpritikin [Fri, 11 Apr 2014 22:23:43 +0000 (22:23 +0000)]
Rename observed.fit to observedFit and require a name instead of MxCompute

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3328 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRename free.set to freeSet
jpritikin [Fri, 11 Apr 2014 22:23:39 +0000 (22:23 +0000)]
Rename free.set to freeSet

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3327 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoComputeEM: remove post.mstep argument
jpritikin [Fri, 11 Apr 2014 22:23:31 +0000 (22:23 +0000)]
ComputeEM: remove post.mstep argument

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3326 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTrying once again. Lots of updates to the help files.
sboker [Fri, 11 Apr 2014 18:51:29 +0000 (18:51 +0000)]
Trying once again.  Lots of updates to the help files.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3325 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTune N-R performance a bit
jpritikin [Fri, 11 Apr 2014 18:15:52 +0000 (18:15 +0000)]
Tune N-R performance a bit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3324 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCheckpoint rewrite
jpritikin [Fri, 11 Apr 2014 18:15:51 +0000 (18:15 +0000)]
Checkpoint rewrite

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3323 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoUpdate failing test to check for correct answers
jpritikin [Fri, 11 Apr 2014 18:15:49 +0000 (18:15 +0000)]
Update failing test to check for correct answers

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3322 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoProblem with mxConstraint.Rd solved
mzahery [Fri, 11 Apr 2014 16:28:48 +0000 (16:28 +0000)]
Problem with mxConstraint.Rd solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3321 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agochanges to doc files
hmaes [Fri, 11 Apr 2014 16:16:03 +0000 (16:16 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3320 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agochanges to doc files
hmaes [Fri, 11 Apr 2014 16:15:40 +0000 (16:15 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3319 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agochanges to doc files
hmaes [Fri, 11 Apr 2014 16:15:26 +0000 (16:15 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3318 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoManual page updates to change @ to $
sboker [Fri, 11 Apr 2014 15:04:58 +0000 (15:04 +0000)]
Manual page updates to change @ to $

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3317 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoChanged more @s to .
tbrick [Fri, 11 Apr 2014 15:02:32 +0000 (15:02 +0000)]
Changed more @s to .

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3316 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd failing test for CSOLNP
jpritikin [Fri, 11 Apr 2014 13:45:31 +0000 (13:45 +0000)]
Add failing test for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3315 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoExpectation-Fit revision to multigroup User's Guide pages.
mhunter [Fri, 11 Apr 2014 06:09:41 +0000 (06:09 +0000)]
Expectation-Fit revision to multigroup User's Guide pages.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3314 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTemporarily remove failing test from our torture list
jpritikin [Thu, 10 Apr 2014 09:57:48 +0000 (09:57 +0000)]
Temporarily remove failing test from our torture list

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3313 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRelax tolerance for CSOLNP
jpritikin [Thu, 10 Apr 2014 09:56:35 +0000 (09:56 +0000)]
Relax tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3312 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1