openmx:openmx.git
4 years agoSet scores with no information to NA
jpritikin [Mon, 16 Dec 2013 14:44:26 +0000 (14:44 +0000)]
Set scores with no information to NA

Otherwise the scores reflect the prior distribution. Strictly speaking,
this is correct, but it's probably not what an analyst would expect.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3010 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAllow non-bifactor design matrix
jpritikin [Sat, 14 Dec 2013 12:04:37 +0000 (12:04 +0000)]
Allow non-bifactor design matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3009 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoExpress item and latent parameter map dependencies more precisely
jpritikin [Sat, 14 Dec 2013 12:04:30 +0000 (12:04 +0000)]
Express item and latent parameter map dependencies more precisely

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3008 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused variable decl
jpritikin [Thu, 12 Dec 2013 18:59:39 +0000 (18:59 +0000)]
Remove unused variable decl

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3007 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoConditionally compile NPSOL global variables
jpritikin [Thu, 12 Dec 2013 18:59:36 +0000 (18:59 +0000)]
Conditionally compile NPSOL global variables

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3006 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp_warnings removed v2
mzahery [Thu, 12 Dec 2013 16:07:20 +0000 (16:07 +0000)]
Csolnp_warnings removed v2

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3005 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp_warnings removed
mzahery [Thu, 12 Dec 2013 15:09:45 +0000 (15:09 +0000)]
Csolnp_warnings removed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3004 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReduce use of protect stack
jpritikin [Sat, 7 Dec 2013 16:56:14 +0000 (16:56 +0000)]
Reduce use of protect stack

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3003 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSuggest how to debug protect stack overflow
jpritikin [Sat, 7 Dec 2013 16:56:08 +0000 (16:56 +0000)]
Suggest how to debug protect stack overflow

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3002 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSplit SE calculation into separate Compute object
jpritikin [Sat, 7 Dec 2013 12:59:24 +0000 (12:59 +0000)]
Split SE calculation into separate Compute object

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3001 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMake No Sort Data option addition unique in state space expectations so duplicates...
mhunter [Sat, 7 Dec 2013 05:15:06 +0000 (05:15 +0000)]
Make No Sort Data option addition unique in state space expectations so duplicates do not get added.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3000 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCreate labels for special variable groups
jpritikin [Tue, 26 Nov 2013 00:21:50 +0000 (00:21 +0000)]
Create labels for special variable groups

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2999 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoInvertSymmetricIndef
jpritikin [Tue, 26 Nov 2013 00:21:47 +0000 (00:21 +0000)]
InvertSymmetricIndef

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2998 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp: warnings v2
mzahery [Fri, 22 Nov 2013 20:27:47 +0000 (20:27 +0000)]
Csolnp: warnings v2

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2997 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp: warnings v1
mzahery [Fri, 22 Nov 2013 20:22:06 +0000 (20:22 +0000)]
Csolnp: warnings v1

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2996 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPermit easy specification of the default optimizer in R code
jpritikin [Fri, 22 Nov 2013 18:57:12 +0000 (18:57 +0000)]
Permit easy specification of the default optimizer in R code

For example,

mxOption(NULL, "Default optimizer", "NPSOL")
mxOption(NULL, "Default optimizer", "CSOLNP")

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2995 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoomxImportFrontendState: commented lines 342-350
mzahery [Thu, 21 Nov 2013 08:30:45 +0000 (08:30 +0000)]
omxImportFrontendState: commented lines 342-350

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2994 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCsolnp: State space models
mzahery [Thu, 21 Nov 2013 08:27:02 +0000 (08:27 +0000)]
Csolnp: State space models

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2993 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDemonstrate how to compute the Fisher information matrix
jpritikin [Wed, 20 Nov 2013 10:57:58 +0000 (10:57 +0000)]
Demonstrate how to compute the Fisher information matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2992 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't warn if not all outcomes are represented in the data
jpritikin [Wed, 20 Nov 2013 10:57:52 +0000 (10:57 +0000)]
Don't warn if not all outcomes are represented in the data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2991 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix quadrature for two-tier models
jpritikin [Fri, 15 Nov 2013 20:06:14 +0000 (20:06 +0000)]
Fix quadrature for two-tier models

This bug only affects two-tier models with more than 1 primary
dimension. Bifactor models were unaffected.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2988 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd more examples from flexMIRT
jpritikin [Wed, 13 Nov 2013 19:29:29 +0000 (19:29 +0000)]
Add more examples from flexMIRT

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2985 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoGeneric ComputeEM with Ramsay (1975) acceleration
jpritikin [Wed, 13 Nov 2013 19:29:19 +0000 (19:29 +0000)]
Generic ComputeEM with Ramsay (1975) acceleration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2984 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSync with rpf
jpritikin [Wed, 13 Nov 2013 19:29:12 +0000 (19:29 +0000)]
Sync with rpf

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2983 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd matrix symmetric pos def inverse
jpritikin [Wed, 13 Nov 2013 19:29:09 +0000 (19:29 +0000)]
Add matrix symmetric pos def inverse

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2982 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoNote minor bug
jpritikin [Wed, 13 Nov 2013 19:29:05 +0000 (19:29 +0000)]
Note minor bug

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2981 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove starting value of state space example within bounds.
mhunter [Thu, 7 Nov 2013 16:00:26 +0000 (16:00 +0000)]
Move starting value of state space example within bounds.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2980 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoKeep parameters within bounds
jpritikin [Thu, 7 Nov 2013 15:53:20 +0000 (15:53 +0000)]
Keep parameters within bounds

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2979 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoWork around cran-check issues
jpritikin [Sun, 3 Nov 2013 17:39:53 +0000 (17:39 +0000)]
Work around cran-check issues

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2977 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix more documentation
jpritikin [Sun, 3 Nov 2013 17:39:48 +0000 (17:39 +0000)]
Fix more documentation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2976 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agohttp://openmx.psyc.virginia.edu/issue/2013/10/mxrename-fitted-model-objects-leaves...
jpritikin [Sat, 26 Oct 2013 00:14:26 +0000 (00:14 +0000)]
openmx.psyc.virginia.edu/issue/2013/10/mxrename-fitted-model-objects-leaves-mxconstraint-objects-unrenamed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2975 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove redundent and tricky matrix invert code
jpritikin [Sat, 26 Oct 2013 00:14:22 +0000 (00:14 +0000)]
Remove redundent and tricky matrix invert code

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2974 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMake MatrixInvert more generic
jpritikin [Fri, 25 Oct 2013 20:23:20 +0000 (20:23 +0000)]
Make MatrixInvert more generic

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2973 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused field from struct Matrix
jpritikin [Fri, 25 Oct 2013 19:52:06 +0000 (19:52 +0000)]
Remove unused field from struct Matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2972 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAvoid another copy of the currentState
jpritikin [Fri, 25 Oct 2013 19:52:03 +0000 (19:52 +0000)]
Avoid another copy of the currentState

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2971 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport info code in error
jpritikin [Thu, 24 Oct 2013 21:13:04 +0000 (21:13 +0000)]
Report info code in error

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2970 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd check for positive definite expected covariance matrix for state space expectations.
mhunter [Thu, 24 Oct 2013 15:45:38 +0000 (15:45 +0000)]
Add check for positive definite expected covariance matrix for state space expectations.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2969 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd more aliases
jpritikin [Thu, 24 Oct 2013 15:20:36 +0000 (15:20 +0000)]
Add more aliases

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2968 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove redundent test
jpritikin [Thu, 24 Oct 2013 10:14:05 +0000 (10:14 +0000)]
Remove redundent test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2966 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAddress serious compile warnings
jpritikin [Wed, 23 Oct 2013 20:42:58 +0000 (20:42 +0000)]
Address serious compile warnings

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2965 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDeadcode
jpritikin [Wed, 23 Oct 2013 20:42:57 +0000 (20:42 +0000)]
Deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2964 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTry again to plug small memory leak
jpritikin [Wed, 23 Oct 2013 20:42:55 +0000 (20:42 +0000)]
Try again to plug small memory leak

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2963 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Plug small memory leak"
jpritikin [Wed, 23 Oct 2013 18:12:57 +0000 (18:12 +0000)]
Revert "Plug small memory leak"

This reverts commit 10863fde80067f904669541b3d3b471e3086bbcd.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2962 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSync with rpf 0.16
jpritikin [Tue, 22 Oct 2013 16:52:00 +0000 (16:52 +0000)]
Sync with rpf 0.16

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2961 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPlug small memory leak
jpritikin [Tue, 22 Oct 2013 16:51:58 +0000 (16:51 +0000)]
Plug small memory leak

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2960 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: memory leaks v2
mzahery [Mon, 21 Oct 2013 21:07:34 +0000 (21:07 +0000)]
CSOLNP: memory leaks v2

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2959 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove some obsolete comments
jpritikin [Mon, 21 Oct 2013 14:27:16 +0000 (14:27 +0000)]
Remove some obsolete comments

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2958 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix deriv test
jpritikin [Mon, 21 Oct 2013 14:27:16 +0000 (14:27 +0000)]
Fix deriv test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2957 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoExamine accuracy of derivs
jpritikin [Sat, 19 Oct 2013 17:10:17 +0000 (17:10 +0000)]
Examine accuracy of derivs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2956 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReorg to adjust the tolerance for Ramsay damping
jpritikin [Sat, 19 Oct 2013 17:10:09 +0000 (17:10 +0000)]
Reorg to adjust the tolerance for Ramsay damping

It may makes no practical difference, but maybe it is the right thing to
do.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2955 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoExamine accuracy of derivs
jpritikin [Sat, 19 Oct 2013 17:10:07 +0000 (17:10 +0000)]
Examine accuracy of derivs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2954 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoIncrease precision of test
jpritikin [Sat, 19 Oct 2013 17:10:01 +0000 (17:10 +0000)]
Increase precision of test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2953 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd lots of doc aliases
jpritikin [Wed, 16 Oct 2013 20:25:58 +0000 (20:25 +0000)]
Add lots of doc aliases

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2952 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEmpty free list on both sides of omxInvokeCSOLNP
jpritikin [Wed, 16 Oct 2013 19:46:13 +0000 (19:46 +0000)]
Empty free list on both sides of omxInvokeCSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2951 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAvoid uninitialized memory reads for now; Mahsa, pls set inform sensibly
jpritikin [Wed, 16 Oct 2013 19:46:11 +0000 (19:46 +0000)]
Avoid uninitialized memory reads for now; Mahsa, pls set inform sensibly

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2950 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSimplify free list
jpritikin [Wed, 16 Oct 2013 19:40:03 +0000 (19:40 +0000)]
Simplify free list

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2949 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix compile
jpritikin [Wed, 16 Oct 2013 19:40:01 +0000 (19:40 +0000)]
Fix compile

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2948 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd an install-cran rule
jpritikin [Wed, 16 Oct 2013 19:40:00 +0000 (19:40 +0000)]
Add an install-cran rule

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2947 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: Memory leaks
mzahery [Wed, 16 Oct 2013 18:57:43 +0000 (18:57 +0000)]
CSOLNP: Memory leaks

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2946 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd identified hessian test.
mhunter [Mon, 14 Oct 2013 19:57:38 +0000 (19:57 +0000)]
Add identified hessian test.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2945 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix bug in mxData of type acov that mandated thresholds. Now thresholds are optional.
mhunter [Fri, 11 Oct 2013 17:02:32 +0000 (17:02 +0000)]
Fix bug in mxData of type acov that mandated thresholds.  Now thresholds are optional.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2942 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRd updates. Updated summary to list the error codes the user might see in, for instan...
tbates [Fri, 11 Oct 2013 14:51:01 +0000 (14:51 +0000)]
Rd updates. Updated summary to list the error codes the user might see in, for instance, CIs.
Added a working example mxModel to summary();
updated mxRun to show an example of running a CI; updated mxCI to note that errors have meanings that can be found

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2940 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove failing test to failing dir
jpritikin [Thu, 10 Oct 2013 14:57:31 +0000 (14:57 +0000)]
Move failing test to failing dir

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2939 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd documentation (more cran prep)
jpritikin [Thu, 10 Oct 2013 14:52:52 +0000 (14:52 +0000)]
Add documentation (more cran prep)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2938 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd failing test
jpritikin [Thu, 10 Oct 2013 13:57:14 +0000 (13:57 +0000)]
Add failing test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2937 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename PPML.Test.Test back to imxPPML.Test.Test
jpritikin [Fri, 4 Oct 2013 19:15:15 +0000 (19:15 +0000)]
Rename PPML.Test.Test back to imxPPML.Test.Test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2936 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix operator< per http://gcc.gnu.org/bugzilla/show_bug.cgi?id=58562
jpritikin [Fri, 4 Oct 2013 14:49:59 +0000 (14:49 +0000)]
Fix operator< per gcc.gnu.org/bugzilla/show_bug.cgi?id=58562

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2935 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix dependencies
jpritikin [Fri, 4 Oct 2013 14:49:59 +0000 (14:49 +0000)]
Fix dependencies

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2934 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix order of multiply to avoid floating point overflow
jpritikin [Fri, 4 Oct 2013 13:40:20 +0000 (13:40 +0000)]
Fix order of multiply to avoid floating point overflow

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2933 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDocument a bunch of imx functions
jpritikin [Thu, 3 Oct 2013 19:04:37 +0000 (19:04 +0000)]
Document a bunch of imx functions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2932 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename a few more PPML functions
jpritikin [Thu, 3 Oct 2013 19:04:37 +0000 (19:04 +0000)]
Rename a few more PPML functions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2931 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd myself as an author
jpritikin [Thu, 3 Oct 2013 19:04:37 +0000 (19:04 +0000)]
Add myself as an author

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2930 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename functions to avoid exporting
jpritikin [Thu, 3 Oct 2013 19:04:36 +0000 (19:04 +0000)]
Rename functions to avoid exporting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2929 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFactor out code style check
jpritikin [Thu, 3 Oct 2013 19:04:35 +0000 (19:04 +0000)]
Factor out code style check

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2928 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTry again to fix Windows NPSOL build
jpritikin [Thu, 3 Oct 2013 14:37:32 +0000 (14:37 +0000)]
Try again to fix Windows NPSOL build

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2927 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd more ignores
jpritikin [Thu, 3 Oct 2013 14:32:08 +0000 (14:32 +0000)]
Add more ignores

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2926 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix shell escaping for windows build
jpritikin [Thu, 3 Oct 2013 14:32:07 +0000 (14:32 +0000)]
Fix shell escaping for windows build

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2925 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFactor out rox generated documentation list
jpritikin [Thu, 3 Oct 2013 14:32:07 +0000 (14:32 +0000)]
Factor out rox generated documentation list

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2924 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTry to fix windows NPSOL build
jpritikin [Thu, 3 Oct 2013 14:20:24 +0000 (14:20 +0000)]
Try to fix windows NPSOL build

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2923 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename most PPML functions to keep them unexported
jpritikin [Thu, 3 Oct 2013 14:13:31 +0000 (14:13 +0000)]
Rename most PPML functions to keep them unexported

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2922 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDocument new cran make targets
jpritikin [Thu, 3 Oct 2013 14:13:30 +0000 (14:13 +0000)]
Document new cran make targets

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2921 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix example in LISREL documentation.
mhunter [Thu, 3 Oct 2013 13:45:27 +0000 (13:45 +0000)]
Fix example in LISREL documentation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2920 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSpell out parameter name for pmvnorm
jpritikin [Thu, 3 Oct 2013 13:41:34 +0000 (13:41 +0000)]
Spell out parameter name for pmvnorm

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2919 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix windows to build with/without NPSOL
jpritikin [Thu, 3 Oct 2013 13:41:34 +0000 (13:41 +0000)]
Fix windows to build with/without NPSOL

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2918 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix build without NPSOL
jpritikin [Wed, 2 Oct 2013 17:54:47 +0000 (17:54 +0000)]
Fix build without NPSOL

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2917 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFail with a sensible message if an old version of RPF is installed
jpritikin [Tue, 1 Oct 2013 13:09:28 +0000 (13:09 +0000)]
Fail with a sensible message if an old version of RPF is installed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2916 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport # of H-G terms in debug info
jpritikin [Tue, 1 Oct 2013 13:09:27 +0000 (13:09 +0000)]
Report # of H-G terms in debug info

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2915 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't warn if the mxFactor attribute is missing on factors
jpritikin [Sun, 29 Sep 2013 10:46:19 +0000 (10:46 +0000)]
Don't warn if the mxFactor attribute is missing on factors

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2914 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix a few warnings
jpritikin [Sun, 29 Sep 2013 01:29:13 +0000 (01:29 +0000)]
Fix a few warnings

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2913 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEnable extra gcc warning categories
jpritikin [Sun, 29 Sep 2013 01:29:09 +0000 (01:29 +0000)]
Enable extra gcc warning categories

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2912 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't warn about unknown (e.g., openmp) pragmas
jpritikin [Sun, 29 Sep 2013 01:29:06 +0000 (01:29 +0000)]
Don't warn about unknown (e.g., openmp) pragmas

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2911 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove mxFactor warning msg at urging of Tim Bates
jpritikin [Sat, 28 Sep 2013 17:43:02 +0000 (17:43 +0000)]
Improve mxFactor warning msg at urging of Tim Bates

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2910 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAllow summary to work with unnamed estimates
jpritikin [Fri, 27 Sep 2013 17:17:46 +0000 (17:17 +0000)]
Allow summary to work with unnamed estimates

The estimates really shouldn't be unnamed. We need to figure out where
the name is assigned and figure out why it isn't getting assigned.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2909 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport initial fit value when iterating
jpritikin [Fri, 27 Sep 2013 17:17:46 +0000 (17:17 +0000)]
Report initial fit value when iterating

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2908 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove check whether all outcomes are represented in the data
jpritikin [Fri, 27 Sep 2013 17:17:45 +0000 (17:17 +0000)]
Remove check whether all outcomes are represented in the data

For multigroup models, the non-reference group might have
inadequate data to fit all the parameters but that should
not prevent an attempt at estimation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2907 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSet factor levels up correctly
jpritikin [Fri, 27 Sep 2013 17:17:45 +0000 (17:17 +0000)]
Set factor levels up correctly

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2906 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove omxPrintMatrix formatting
jpritikin [Thu, 26 Sep 2013 14:08:04 +0000 (14:08 +0000)]
Improve omxPrintMatrix formatting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2905 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd newlines between rows in omxPrintMatrix
jpritikin [Thu, 26 Sep 2013 14:03:39 +0000 (14:03 +0000)]
Add newlines between rows in omxPrintMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2904 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate state space documentation to reflect missing data changes.
mhunter [Wed, 25 Sep 2013 05:11:37 +0000 (05:11 +0000)]
Update state space documentation to reflect missing data changes.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2903 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoWorking missing data handling for state space expectation with a passing test. Hooray.
mhunter [Tue, 24 Sep 2013 17:45:21 +0000 (17:45 +0000)]
Working missing data handling for state space expectation with a passing test.  Hooray.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@2902 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1