openmx:openmx.git
4 years agoDo not resetDataSortingFlags
jpritikin [Mon, 21 Apr 2014 19:55:42 +0000 (19:55 +0000)]
Do not resetDataSortingFlags

I hope this change will not break backward compatibility. If the data is
sorted, why do we need to mark it unsorted after mxRun? Sorting it again
should obtain the same result as not sorting it again.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3368 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove deadcode from failed experiment
jpritikin [Mon, 21 Apr 2014 19:55:41 +0000 (19:55 +0000)]
Remove deadcode from failed experiment

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3367 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: taking care of general warnings
mzahery [Mon, 21 Apr 2014 19:10:58 +0000 (19:10 +0000)]
CSOLNP: taking care of general warnings

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3366 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: warnings about convergence solved
mzahery [Mon, 21 Apr 2014 03:21:31 +0000 (03:21 +0000)]
CSOLNP: warnings about convergence solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3365 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCan omit initial fit computation after the first iteration
jpritikin [Sat, 19 Apr 2014 14:20:17 +0000 (14:20 +0000)]
Can omit initial fit computation after the first iteration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3364 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd some args for control of NA behavior
jpritikin [Sat, 19 Apr 2014 14:20:12 +0000 (14:20 +0000)]
Add some args for control of NA behavior

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3363 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRandom number generation changed from R-2.14 vs later versions
jpritikin [Fri, 18 Apr 2014 20:35:04 +0000 (20:35 +0000)]
Random number generation changed from R-2.14 vs later versions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3362 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSwitch from MASS::mvrnorm to mvtnorm::rmvnorm
jpritikin [Fri, 18 Apr 2014 10:19:52 +0000 (10:19 +0000)]
Switch from MASS::mvrnorm to mvtnorm::rmvnorm

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3361 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused arguments from omxRaiseError, omxRaiseErrorf
jpritikin [Thu, 17 Apr 2014 15:43:03 +0000 (15:43 +0000)]
Remove unused arguments from omxRaiseError, omxRaiseErrorf

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3360 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused argument from omxResizeMatrix
jpritikin [Thu, 17 Apr 2014 15:43:01 +0000 (15:43 +0000)]
Remove unused argument from omxResizeMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3359 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove irrelevant computation from test
jpritikin [Thu, 17 Apr 2014 14:31:20 +0000 (14:31 +0000)]
Remove irrelevant computation from test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3358 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoLet roxygen handle OpenMx.Rd
jpritikin [Wed, 16 Apr 2014 19:35:39 +0000 (19:35 +0000)]
Let roxygen handle OpenMx.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3357 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert Tim Bates' disasterous manual changes (pls try again)
jpritikin [Wed, 16 Apr 2014 19:32:50 +0000 (19:32 +0000)]
Revert Tim Bates' disasterous manual changes (pls try again)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3356 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEval the fit function before fitting the model
jpritikin [Wed, 16 Apr 2014 19:16:27 +0000 (19:16 +0000)]
Eval the fit function before fitting the model

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3355 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEnable colored diagnostics for gcc 4.9
jpritikin [Wed, 16 Apr 2014 13:58:37 +0000 (13:58 +0000)]
Enable colored diagnostics for gcc 4.9

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3354 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdding back manually built help files
tbates [Tue, 15 Apr 2014 15:47:22 +0000 (15:47 +0000)]
Adding back manually built help files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3353 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdding back manually built help files
tbates [Tue, 15 Apr 2014 14:36:13 +0000 (14:36 +0000)]
Adding back manually built help files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3352 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDeleting last .Rd file and added <svn propset svn:ignore "*.Rd" .> to ignore Rd...
tbates [Tue, 15 Apr 2014 00:57:54 +0000 (00:57 +0000)]
Deleting last .Rd file and added <svn propset svn:ignore "*.Rd" .>  to ignore Rd files in future

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3351 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemoving .Rd files (people think these shouldn't be repo'd as they can be built)
tbates [Tue, 15 Apr 2014 00:53:30 +0000 (00:53 +0000)]
Removing .Rd files (people think these shouldn't be repo'd as they can be built)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3350 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agouse mxComputeSequence to compute output$hessian
tbates [Mon, 14 Apr 2014 19:09:36 +0000 (19:09 +0000)]
use mxComputeSequence to compute output$hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3349 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoseveral Rd files now built with roxygen
tbates [Mon, 14 Apr 2014 18:41:07 +0000 (18:41 +0000)]
several Rd files now built with roxygen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3348 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoupdating comments and examples to use $ rather than @ (and @@ where used in #' commen...
tbates [Mon, 14 Apr 2014 18:40:27 +0000 (18:40 +0000)]
updating comments and examples to use $ rather than @ (and @@ where used in #' comments. Documents ?OpenMx in zzz.R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3347 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoHandle omxRemoveRowsAndColumns for row-major order; add tests
jpritikin [Sun, 13 Apr 2014 23:24:30 +0000 (23:24 +0000)]
Handle omxRemoveRowsAndColumns for row-major order; add tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3346 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoomxAliasMatrix, omxResetAliasedMatrix are essentially omxCopyMatrix
jpritikin [Sun, 13 Apr 2014 22:15:18 +0000 (22:15 +0000)]
omxAliasMatrix, omxResetAliasedMatrix are essentially omxCopyMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3345 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoProhibit omxResetAliasedMatrix on non-aliased matrices
jpritikin [Sun, 13 Apr 2014 22:15:16 +0000 (22:15 +0000)]
Prohibit omxResetAliasedMatrix on non-aliased matrices

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3344 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agochanges to doc files
hmaes [Sun, 13 Apr 2014 21:24:55 +0000 (21:24 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3343 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoBug fixes to conformability checks in SSM, and SSM expectation arguments allowed...
mhunter [Sun, 13 Apr 2014 19:40:00 +0000 (19:40 +0000)]
Bug fixes to conformability checks in SSM, and SSM expectation arguments allowed to be the result of algebras.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3342 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSimplify implementation of aliased matrices
jpritikin [Sun, 13 Apr 2014 19:17:36 +0000 (19:17 +0000)]
Simplify implementation of aliased matrices

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3341 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Temporarily remove conformability checking in SSM and add some debugging...
jpritikin [Sun, 13 Apr 2014 19:17:32 +0000 (19:17 +0000)]
Revert "Temporarily remove conformability checking in SSM and add some debugging in SSM."

This reverts commit 928803c2fb96d9e31f32ad4c68a516c43a4250eb.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3340 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Development"
jpritikin [Sun, 13 Apr 2014 00:29:43 +0000 (00:29 +0000)]
Revert "Development"

This reverts commit 8526380cd999593b11634f2a0e8c54d9b636aa0f.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3339 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix memory corruption in omxResetAliasedMatrix
jpritikin [Sun, 13 Apr 2014 00:28:16 +0000 (00:28 +0000)]
Fix memory corruption in omxResetAliasedMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3338 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDevelopment
jpritikin [Sun, 13 Apr 2014 00:28:15 +0000 (00:28 +0000)]
Development

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3337 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTidy mxComputeEM user interface, add doc
jpritikin [Sat, 12 Apr 2014 18:55:45 +0000 (18:55 +0000)]
Tidy mxComputeEM user interface, add doc

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3336 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove the last @
jpritikin [Sat, 12 Apr 2014 18:55:42 +0000 (18:55 +0000)]
Remove the last @

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3335 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPlace BA81 expectation in observed mode by default
jpritikin [Sat, 12 Apr 2014 18:55:39 +0000 (18:55 +0000)]
Place BA81 expectation in observed mode by default

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3334 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTemporarily remove conformability checking in SSM and add some debugging in SSM.
mhunter [Sat, 12 Apr 2014 14:22:10 +0000 (14:22 +0000)]
Temporarily remove conformability checking in SSM and add some debugging in SSM.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3333 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoProhibit mxFitFunctionMultigroup with no groups
jpritikin [Sat, 12 Apr 2014 12:15:33 +0000 (12:15 +0000)]
Prohibit mxFitFunctionMultigroup with no groups

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3332 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove old Mx
jpritikin [Sat, 12 Apr 2014 11:11:12 +0000 (11:11 +0000)]
Remove old Mx

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3331 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused slots
jpritikin [Sat, 12 Apr 2014 10:05:11 +0000 (10:05 +0000)]
Remove unused slots

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3330 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoConvert paste0 into paste for R 2.14
jpritikin [Fri, 11 Apr 2014 22:34:00 +0000 (22:34 +0000)]
Convert paste0 into paste for R 2.14

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3329 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename observed.fit to observedFit and require a name instead of MxCompute
jpritikin [Fri, 11 Apr 2014 22:23:43 +0000 (22:23 +0000)]
Rename observed.fit to observedFit and require a name instead of MxCompute

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3328 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename free.set to freeSet
jpritikin [Fri, 11 Apr 2014 22:23:39 +0000 (22:23 +0000)]
Rename free.set to freeSet

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3327 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoComputeEM: remove post.mstep argument
jpritikin [Fri, 11 Apr 2014 22:23:31 +0000 (22:23 +0000)]
ComputeEM: remove post.mstep argument

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3326 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTrying once again. Lots of updates to the help files.
sboker [Fri, 11 Apr 2014 18:51:29 +0000 (18:51 +0000)]
Trying once again.  Lots of updates to the help files.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3325 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTune N-R performance a bit
jpritikin [Fri, 11 Apr 2014 18:15:52 +0000 (18:15 +0000)]
Tune N-R performance a bit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3324 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCheckpoint rewrite
jpritikin [Fri, 11 Apr 2014 18:15:51 +0000 (18:15 +0000)]
Checkpoint rewrite

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3323 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate failing test to check for correct answers
jpritikin [Fri, 11 Apr 2014 18:15:49 +0000 (18:15 +0000)]
Update failing test to check for correct answers

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3322 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoProblem with mxConstraint.Rd solved
mzahery [Fri, 11 Apr 2014 16:28:48 +0000 (16:28 +0000)]
Problem with mxConstraint.Rd solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3321 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agochanges to doc files
hmaes [Fri, 11 Apr 2014 16:16:03 +0000 (16:16 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3320 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agochanges to doc files
hmaes [Fri, 11 Apr 2014 16:15:40 +0000 (16:15 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3319 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agochanges to doc files
hmaes [Fri, 11 Apr 2014 16:15:26 +0000 (16:15 +0000)]
changes to doc files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3318 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoManual page updates to change @ to $
sboker [Fri, 11 Apr 2014 15:04:58 +0000 (15:04 +0000)]
Manual page updates to change @ to $

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3317 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoChanged more @s to .
tbrick [Fri, 11 Apr 2014 15:02:32 +0000 (15:02 +0000)]
Changed more @s to .

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3316 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd failing test for CSOLNP
jpritikin [Fri, 11 Apr 2014 13:45:31 +0000 (13:45 +0000)]
Add failing test for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3315 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoExpectation-Fit revision to multigroup User's Guide pages.
mhunter [Fri, 11 Apr 2014 06:09:41 +0000 (06:09 +0000)]
Expectation-Fit revision to multigroup User's Guide pages.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3314 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTemporarily remove failing test from our torture list
jpritikin [Thu, 10 Apr 2014 09:57:48 +0000 (09:57 +0000)]
Temporarily remove failing test from our torture list

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3313 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRelax tolerance for CSOLNP
jpritikin [Thu, 10 Apr 2014 09:56:35 +0000 (09:56 +0000)]
Relax tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3312 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAllow standard errors without Richardson extrapolation
jpritikin [Wed, 9 Apr 2014 15:16:09 +0000 (15:16 +0000)]
Allow standard errors without Richardson extrapolation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3311 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoIncrease default CSOLNP tolerance to 1e-9 to match default NPSOL tolerance
jpritikin [Wed, 9 Apr 2014 15:16:05 +0000 (15:16 +0000)]
Increase default CSOLNP tolerance to 1e-9 to match default NPSOL tolerance

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3310 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoR-2.14 does not have norm(...,"2")
jpritikin [Wed, 9 Apr 2014 13:44:05 +0000 (13:44 +0000)]
R-2.14 does not have norm(...,"2")

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3309 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRestore bootstrap tests
jpritikin [Wed, 9 Apr 2014 01:42:06 +0000 (01:42 +0000)]
Restore bootstrap tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3308 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: gradient is returned
mzahery [Tue, 8 Apr 2014 22:28:47 +0000 (22:28 +0000)]
CSOLNP: gradient is returned

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3307 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd failing optimizer test
jpritikin [Tue, 8 Apr 2014 19:59:48 +0000 (19:59 +0000)]
Add failing optimizer test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3306 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUse --debugger-args, maybe helps on MacOS
jpritikin [Tue, 8 Apr 2014 14:42:13 +0000 (14:42 +0000)]
Use --debugger-args, maybe helps on MacOS

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3305 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSuppress gdb's new thread/thread exited messages
jpritikin [Tue, 8 Apr 2014 10:05:07 +0000 (10:05 +0000)]
Suppress gdb's new thread/thread exited messages

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3304 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRepair test: don't ask for unavailable derivs
jpritikin [Tue, 8 Apr 2014 09:55:08 +0000 (09:55 +0000)]
Repair test: don't ask for unavailable derivs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3303 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRelax tolerance for CSOLNP
jpritikin [Tue, 8 Apr 2014 09:55:06 +0000 (09:55 +0000)]
Relax tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3302 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPreserve dimnames in assignments to MxMatrix slots
jpritikin [Mon, 7 Apr 2014 19:07:44 +0000 (19:07 +0000)]
Preserve dimnames in assignments to MxMatrix slots

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3301 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoProhibit @ in test scripts
jpritikin [Mon, 7 Apr 2014 19:07:43 +0000 (19:07 +0000)]
Prohibit @ in test scripts

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3300 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd test for a continuous time model (contributed by Charles Driver)
jpritikin [Mon, 7 Apr 2014 19:07:42 +0000 (19:07 +0000)]
Add test for a continuous time model (contributed by Charles Driver)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3299 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdded failing test for checkpointing output.
rkirkpatrick [Mon, 7 Apr 2014 15:28:17 +0000 (15:28 +0000)]
Added failing test for checkpointing output.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3298 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRefuse to compute derivs for no free parameters
jpritikin [Mon, 7 Apr 2014 14:49:31 +0000 (14:49 +0000)]
Refuse to compute derivs for no free parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3297 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix bug introduced in "rework reporting of iterations and optimizer status"
jpritikin [Mon, 7 Apr 2014 14:49:30 +0000 (14:49 +0000)]
Fix bug introduced in "rework reporting of iterations and optimizer status"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3296 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix hanging test
jpritikin [Mon, 7 Apr 2014 10:06:31 +0000 (10:06 +0000)]
Fix hanging test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3295 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoNewton-Raphson rewrite
jpritikin [Sun, 6 Apr 2014 16:53:29 +0000 (16:53 +0000)]
Newton-Raphson rewrite

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3294 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRework reporting of iterations and optimizer status; add failing test
jpritikin [Sun, 6 Apr 2014 16:53:23 +0000 (16:53 +0000)]
Rework reporting of iterations and optimizer status; add failing test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3293 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix memory corruption in matrix populate lists
jpritikin [Sat, 5 Apr 2014 23:28:48 +0000 (23:28 +0000)]
Fix memory corruption in matrix populate lists

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3292 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate nightly IFA tests for mxDataDynamic
jpritikin [Sat, 5 Apr 2014 10:38:27 +0000 (10:38 +0000)]
Update nightly IFA tests for mxDataDynamic

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3291 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoWill fail until gradient is returned by CSOLNP
jpritikin [Sat, 5 Apr 2014 10:03:09 +0000 (10:03 +0000)]
Will fail until gradient is returned by CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3290 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRelax tolerance for CSOLNP
jpritikin [Sat, 5 Apr 2014 09:52:42 +0000 (09:52 +0000)]
Relax tolerance for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3289 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoOrdinal and GMM docs done
restabrook [Fri, 4 Apr 2014 19:23:12 +0000 (19:23 +0000)]
Ordinal and GMM docs done

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3288 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused omxInitMatrix argument
jpritikin [Fri, 4 Apr 2014 16:27:20 +0000 (16:27 +0000)]
Remove unused omxInitMatrix argument

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3287 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agomxDataDynamic
jpritikin [Fri, 4 Apr 2014 15:39:33 +0000 (15:39 +0000)]
mxDataDynamic

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3286 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoChange ASEM parameters based on more recent simulations
jpritikin [Fri, 4 Apr 2014 15:39:28 +0000 (15:39 +0000)]
Change ASEM parameters based on more recent simulations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3285 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAccept 1 item spec if they are all the same
jpritikin [Fri, 4 Apr 2014 15:39:25 +0000 (15:39 +0000)]
Accept 1 item spec if they are all the same

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3284 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTidy imxExtractSlot
jpritikin [Fri, 4 Apr 2014 15:39:22 +0000 (15:39 +0000)]
Tidy imxExtractSlot

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3283 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd more gdb hints
jpritikin [Fri, 4 Apr 2014 13:29:15 +0000 (13:29 +0000)]
Add more gdb hints

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3282 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTest with gdb only if gdb is installed
jpritikin [Fri, 4 Apr 2014 13:29:14 +0000 (13:29 +0000)]
Test with gdb only if gdb is installed

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3281 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't hide errors
jpritikin [Fri, 4 Apr 2014 13:29:12 +0000 (13:29 +0000)]
Don't hide errors

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3280 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRepair nightly trauma from the @->$ replacement
jpritikin [Fri, 4 Apr 2014 12:28:09 +0000 (12:28 +0000)]
Repair nightly trauma from the @->$ replacement

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3279 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDemote some errors to debug output
jpritikin [Fri, 4 Apr 2014 10:30:26 +0000 (10:30 +0000)]
Demote some errors to debug output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3278 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSpeaking of aesthetics
jpritikin [Fri, 4 Apr 2014 10:30:21 +0000 (10:30 +0000)]
Speaking of aesthetics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3277 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRepair merge conflict
jpritikin [Fri, 4 Apr 2014 10:30:19 +0000 (10:30 +0000)]
Repair merge conflict

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3276 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix breakage in IFA tests from @->$ replacement
jpritikin [Thu, 3 Apr 2014 21:49:49 +0000 (21:49 +0000)]
Fix breakage in IFA tests from @->$ replacement

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3275 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Move to failing until CSOLNP valgrind errors are addressed"
jpritikin [Thu, 3 Apr 2014 19:53:48 +0000 (19:53 +0000)]
Revert "Move to failing until CSOLNP valgrind errors are addressed"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3274 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove aesthetics of "Adjust state space expectation for removal of omxRaiseErrorf"
jpritikin [Thu, 3 Apr 2014 19:53:47 +0000 (19:53 +0000)]
Improve aesthetics of "Adjust state space expectation for removal of omxRaiseErrorf"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3273 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd state space test of inputs.
mhunter [Thu, 3 Apr 2014 19:30:33 +0000 (19:30 +0000)]
Add state space test of inputs.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3272 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdjust state space expectation for removal of omxRaiseErrorf.
mhunter [Thu, 3 Apr 2014 19:29:50 +0000 (19:29 +0000)]
Adjust state space expectation for removal of omxRaiseErrorf.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3271 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRestore now passing test
jpritikin [Thu, 3 Apr 2014 19:29:17 +0000 (19:29 +0000)]
Restore now passing test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3270 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix misuse of stdargs macros
jpritikin [Thu, 3 Apr 2014 19:29:09 +0000 (19:29 +0000)]
Fix misuse of stdargs macros

For background, https://sourceware.org/bugzilla/show_bug.cgi?id=4977

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3269 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1