openmx:openmx.git
4 years agoProgress on WLS: Fit function adjustments and data debugging.
mhunter [Thu, 6 Mar 2014 06:08:18 +0000 (06:08 +0000)]
Progress on WLS: Fit function adjustments and data debugging.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3118 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdded helpful comment to Windows Makevars file.
mhunter [Thu, 6 Mar 2014 05:58:43 +0000 (05:58 +0000)]
Added helpful comment to Windows Makevars file.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3117 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoProgress toward WLS: build frontend observed threshold variable indexing
mhunter [Thu, 6 Mar 2014 05:57:44 +0000 (05:57 +0000)]
Progress toward WLS: build frontend observed threshold variable indexing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3116 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoElementWISE multiplication etc
mhunter [Thu, 6 Mar 2014 02:17:33 +0000 (02:17 +0000)]
ElementWISE multiplication etc

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3115 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoModified State Space error checking to be more informative.
mhunter [Wed, 5 Mar 2014 21:46:52 +0000 (21:46 +0000)]
Modified State Space error checking to be more informative.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3114 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdded failing model for vector=TRUE fitfunctions.
mhunter [Wed, 5 Mar 2014 15:41:04 +0000 (15:41 +0000)]
Added failing model for vector=TRUE fitfunctions.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3113 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoChange backend initialization order
jpritikin [Wed, 5 Mar 2014 00:55:58 +0000 (00:55 +0000)]
Change backend initialization order

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3112 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdjust buildbot gdb script
jpritikin [Wed, 5 Mar 2014 00:55:50 +0000 (00:55 +0000)]
Adjust buildbot gdb script

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3111 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoD'oh, fix test for error in mxLog
jpritikin [Wed, 5 Mar 2014 00:55:42 +0000 (00:55 +0000)]
D'oh, fix test for error in mxLog

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3110 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSet up the usual gdb breakpoints automatically
jpritikin [Wed, 5 Mar 2014 00:55:38 +0000 (00:55 +0000)]
Set up the usual gdb breakpoints automatically

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3109 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCorrect matrix dimensions in test
jpritikin [Wed, 5 Mar 2014 00:55:35 +0000 (00:55 +0000)]
Correct matrix dimensions in test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3108 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix spectral norm for R 2.14
jpritikin [Wed, 5 Mar 2014 00:55:31 +0000 (00:55 +0000)]
Fix spectral norm for R 2.14

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3107 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAllow simultaneous computation of gradient and gradient covariance
jpritikin [Mon, 3 Mar 2014 18:12:00 +0000 (18:12 +0000)]
Allow simultaneous computation of gradient and gradient covariance

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3106 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdjust precision of close enough checks
jpritikin [Mon, 3 Mar 2014 18:11:57 +0000 (18:11 +0000)]
Adjust precision of close enough checks

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3105 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoOptionally force a PD covariance matrix (not enabled)
jpritikin [Sun, 2 Mar 2014 22:22:42 +0000 (22:22 +0000)]
Optionally force a PD covariance matrix (not enabled)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3104 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSwitch verbose from a logical to an integer
jpritikin [Sun, 2 Mar 2014 22:22:37 +0000 (22:22 +0000)]
Switch verbose from a logical to an integer

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3103 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Entertain a sample covariance formula"
jpritikin [Sun, 2 Mar 2014 22:22:34 +0000 (22:22 +0000)]
Revert "Entertain a sample covariance formula"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3102 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEntertain a sample covariance formula
jpritikin [Sun, 2 Mar 2014 22:22:25 +0000 (22:22 +0000)]
Entertain a sample covariance formula

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3101 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReorg for latent distribution parameter equal constraints
jpritikin [Sun, 2 Mar 2014 22:22:19 +0000 (22:22 +0000)]
Reorg for latent distribution parameter equal constraints

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3100 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFactor out code to force a matrix to be positive semi-definite
jpritikin [Sun, 2 Mar 2014 19:18:48 +0000 (19:18 +0000)]
Factor out code to force a matrix to be positive semi-definite

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3099 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't throw an exception from within a critical section
jpritikin [Sun, 2 Mar 2014 19:18:46 +0000 (19:18 +0000)]
Don't throw an exception from within a critical section

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3098 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix test for mxComputeOnce API change
jpritikin [Sun, 2 Mar 2014 19:18:42 +0000 (19:18 +0000)]
Fix test for mxComputeOnce API change

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3097 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoLimit retries for logging
jpritikin [Sun, 2 Mar 2014 19:18:38 +0000 (19:18 +0000)]
Limit retries for logging

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3096 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix buildbot test failure
jpritikin [Sat, 1 Mar 2014 00:48:22 +0000 (00:48 +0000)]
Fix buildbot test failure

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3095 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove mxComputeOnce, mxComputeEM APIs
jpritikin [Fri, 28 Feb 2014 22:15:58 +0000 (22:15 +0000)]
Improve mxComputeOnce, mxComputeEM APIs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3094 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate references to mxFitFunctionAlgebra and correct dot multiplication explanation...
tbates [Fri, 28 Feb 2014 20:57:32 +0000 (20:57 +0000)]
Update references to mxFitFunctionAlgebra and correct dot multiplication explanation in mxAlgebra.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3093 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUse ... to force named arguments (part 2)
jpritikin [Thu, 27 Feb 2014 22:09:35 +0000 (22:09 +0000)]
Use ... to force named arguments (part 2)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3092 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUse ... to force named arguments
jpritikin [Thu, 27 Feb 2014 21:55:34 +0000 (21:55 +0000)]
Use ... to force named arguments

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3091 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename EM fit functions to match DLR (1977) terminology
jpritikin [Thu, 27 Feb 2014 21:55:32 +0000 (21:55 +0000)]
Rename EM fit functions to match DLR (1977) terminology

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3090 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove positive definite check from ComputeSE to ComputeEM
jpritikin [Thu, 27 Feb 2014 21:42:55 +0000 (21:42 +0000)]
Move positive definite check from ComputeSE to ComputeEM

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3089 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoLots of work on SEM
jpritikin [Thu, 27 Feb 2014 21:42:48 +0000 (21:42 +0000)]
Lots of work on SEM

+ Support for latent parameters
+ Various simulation studies
+ Lots of code reorg

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3088 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove diagnostics
jpritikin [Thu, 27 Feb 2014 21:42:30 +0000 (21:42 +0000)]
Improve diagnostics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3087 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove some conformability checks by showing the dimension mismatch
jpritikin [Wed, 26 Feb 2014 15:50:20 +0000 (15:50 +0000)]
Improve some conformability checks by showing the dimension mismatch

Actually this error check might be deadcode if we catch
conformability problems at the R level. I'm not sure.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3086 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAlways report @output$fit but don't report @output$minimum unless it is
jpritikin [Thu, 20 Feb 2014 21:35:05 +0000 (21:35 +0000)]
Always report @output$fit but don't report @output$minimum unless it is

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3085 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoProperly ignore items with no free parameters
jpritikin [Wed, 19 Feb 2014 18:32:39 +0000 (18:32 +0000)]
Properly ignore items with no free parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3084 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoProhibit rows with no information for some factor
jpritikin [Wed, 19 Feb 2014 18:32:39 +0000 (18:32 +0000)]
Prohibit rows with no information for some factor

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3083 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoState Space changes: 1 Add ability to use inputs, 2 add error checking, 3 update...
mhunter [Tue, 18 Feb 2014 06:27:40 +0000 (06:27 +0000)]
State Space changes: 1 Add ability to use inputs, 2 add error checking, 3 update documentation.  WLS Changes: trying some debugging.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3082 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFixed typos in state space man page.
mhunter [Mon, 17 Feb 2014 21:26:20 +0000 (21:26 +0000)]
Fixed typos in state space man page.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3081 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename ComputeEstimatedHessian to ComputeNumericDeriv
jpritikin [Sun, 16 Feb 2014 14:09:00 +0000 (14:09 +0000)]
Rename ComputeEstimatedHessian to ComputeNumericDeriv

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3080 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPrevent export of some internal classes
jpritikin [Fri, 14 Feb 2014 16:09:04 +0000 (16:09 +0000)]
Prevent export of some internal classes

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3079 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDocument optimizers
jpritikin [Fri, 14 Feb 2014 16:08:58 +0000 (16:08 +0000)]
Document optimizers

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3078 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemoved mxConstraint from state space example, using parameter label equal to result...
mhunter [Thu, 13 Feb 2014 21:09:22 +0000 (21:09 +0000)]
Removed mxConstraint from state space example, using parameter label equal to result of mxAlgebra instead.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3077 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Rename classes not intended for export"
jpritikin [Thu, 13 Feb 2014 15:03:53 +0000 (15:03 +0000)]
Revert "Rename classes not intended for export"

This reverts commit 9bfd22030128fc4dab7eadf68075523329779741.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3076 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRename classes not intended for export
jpritikin [Thu, 13 Feb 2014 14:04:45 +0000 (14:04 +0000)]
Rename classes not intended for export

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3075 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd documentation
jpritikin [Thu, 13 Feb 2014 00:53:28 +0000 (00:53 +0000)]
Add documentation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3074 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix broken test
jpritikin [Wed, 12 Feb 2014 01:12:23 +0000 (01:12 +0000)]
Fix broken test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3073 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMake debug output contingent of a debugInternal flag
jpritikin [Mon, 10 Feb 2014 13:12:29 +0000 (13:12 +0000)]
Make debug output contingent of a debugInternal flag

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3072 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove BA81 expectation output/debug stuff to @output and @debug slots
jpritikin [Mon, 10 Feb 2014 13:12:24 +0000 (13:12 +0000)]
Move BA81 expectation output/debug stuff to @output and @debug slots

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3071 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix possible uninitialized memory read
jpritikin [Mon, 10 Feb 2014 13:12:18 +0000 (13:12 +0000)]
Fix possible uninitialized memory read

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3070 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUsing the name "stderr" with #pragma omp critical can cause conflicts when building...
rkirkpatrick [Thu, 6 Feb 2014 22:10:15 +0000 (22:10 +0000)]
Using the name "stderr" with #pragma omp critical can cause conflicts when building multithread binaries under Windows.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3068 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix jumbled array index in sandwich
jpritikin [Sun, 2 Feb 2014 18:58:30 +0000 (18:58 +0000)]
Fix jumbled array index in sandwich

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3067 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix sandwich for two-tier models
jpritikin [Sat, 1 Feb 2014 03:51:01 +0000 (03:51 +0000)]
Fix sandwich for two-tier models

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3066 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove failing test
jpritikin [Sat, 1 Feb 2014 03:50:55 +0000 (03:50 +0000)]
Remove failing test

models/nightly/ifa-fisher-info.R contains similar code and more

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3065 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix Sandwich; add tests
jpritikin [Thu, 30 Jan 2014 21:57:14 +0000 (21:57 +0000)]
Fix Sandwich; add tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3064 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix LL scale for test
jpritikin [Thu, 30 Jan 2014 15:33:16 +0000 (15:33 +0000)]
Fix LL scale for test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3063 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoKeep loglikelihoodScale set to -2 between tests
jpritikin [Wed, 29 Jan 2014 00:21:36 +0000 (00:21 +0000)]
Keep loglikelihoodScale set to -2 between tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3062 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevive latent distribution gradients
jpritikin [Mon, 27 Jan 2014 22:07:19 +0000 (22:07 +0000)]
Revive latent distribution gradients

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3061 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate R file copyrights. Somehow this got forgotten before.
mhunter [Fri, 24 Jan 2014 03:42:20 +0000 (03:42 +0000)]
Update R file copyrights.  Somehow this got forgotten before.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3057 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoNote code duplication
jpritikin [Thu, 23 Jan 2014 16:22:53 +0000 (16:22 +0000)]
Note code duplication

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3056 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPermit rescaling of log-likelihood
jpritikin [Thu, 23 Jan 2014 16:03:17 +0000 (16:03 +0000)]
Permit rescaling of log-likelihood

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3055 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove old custom prior stuff (part 2)
jpritikin [Thu, 23 Jan 2014 16:03:16 +0000 (16:03 +0000)]
Remove old custom prior stuff (part 2)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3054 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAllow MxCompute C objects to set values in their R objects (part 2)
jpritikin [Sat, 18 Jan 2014 23:09:27 +0000 (23:09 +0000)]
Allow MxCompute C objects to set values in their R objects (part 2)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3053 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd more matrix operations
jpritikin [Fri, 17 Jan 2014 19:25:51 +0000 (19:25 +0000)]
Add more matrix operations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3052 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFactor out code to invert the Hessian
jpritikin [Fri, 17 Jan 2014 19:25:40 +0000 (19:25 +0000)]
Factor out code to invert the Hessian

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3051 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRewrite second order test; rename to ComputeHessianQuality
jpritikin [Fri, 17 Jan 2014 19:25:32 +0000 (19:25 +0000)]
Rewrite second order test; rename to ComputeHessianQuality

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3050 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove deadcode
jpritikin [Fri, 17 Jan 2014 19:25:18 +0000 (19:25 +0000)]
Remove deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3049 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove old custom prior stuff
jpritikin [Fri, 17 Jan 2014 19:25:11 +0000 (19:25 +0000)]
Remove old custom prior stuff

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3048 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport # of function evaluations
jpritikin [Fri, 17 Jan 2014 19:25:03 +0000 (19:25 +0000)]
Report # of function evaluations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3047 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMake MxRList into a C++ class
jpritikin [Fri, 17 Jan 2014 19:24:56 +0000 (19:24 +0000)]
Make MxRList into a C++ class

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3046 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Fix standard error calculation"
jpritikin [Tue, 7 Jan 2014 16:01:39 +0000 (16:01 +0000)]
Revert "Fix standard error calculation"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3045 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport Hessian consistently
jpritikin [Sun, 5 Jan 2014 18:50:18 +0000 (18:50 +0000)]
Report Hessian consistently

The other Hessians ought to be reported in the output slot of their
respective Compute objects. estimatedHessian should be in ComputeGD and
calculatedHessian should be in ComputeEstimatedHessian.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3043 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix standard error calculation
jpritikin [Sun, 5 Jan 2014 18:21:21 +0000 (18:21 +0000)]
Fix standard error calculation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3042 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoConsolidate reporting of the gradient
jpritikin [Thu, 2 Jan 2014 19:20:19 +0000 (19:20 +0000)]
Consolidate reporting of the gradient

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3041 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport Newton-Raphson stuff in slots
jpritikin [Thu, 2 Jan 2014 19:20:08 +0000 (19:20 +0000)]
Report Newton-Raphson stuff in slots

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3040 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoConsolidate reporting of the fit
jpritikin [Thu, 2 Jan 2014 19:19:55 +0000 (19:19 +0000)]
Consolidate reporting of the fit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3039 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReport estimate from 1 place
jpritikin [Thu, 2 Jan 2014 19:19:42 +0000 (19:19 +0000)]
Report estimate from 1 place

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3038 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAllow MxCompute C objects to set values in their R objects
jpritikin [Thu, 2 Jan 2014 19:19:31 +0000 (19:19 +0000)]
Allow MxCompute C objects to set values in their R objects

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3037 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoReduce tolerance for condition number
jpritikin [Thu, 2 Jan 2014 19:19:14 +0000 (19:19 +0000)]
Reduce tolerance for condition number

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3036 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoUpdate copyright.
mhunter [Tue, 31 Dec 2013 21:38:10 +0000 (21:38 +0000)]
Update copyright.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3035 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't worry. I just updated the copyright year.
mhunter [Tue, 31 Dec 2013 21:36:57 +0000 (21:36 +0000)]
Don't worry.  I just updated the copyright year.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3034 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSEM reorg
jpritikin [Tue, 31 Dec 2013 00:21:40 +0000 (00:21 +0000)]
SEM reorg

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3033 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSEM debugging
jpritikin [Tue, 31 Dec 2013 00:21:32 +0000 (00:21 +0000)]
SEM debugging

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3032 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCompute condition number of information matrix
jpritikin [Tue, 31 Dec 2013 00:21:27 +0000 (00:21 +0000)]
Compute condition number of information matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3031 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSEM create pseudo-history if history is not working
jpritikin [Tue, 31 Dec 2013 00:21:17 +0000 (00:21 +0000)]
SEM create pseudo-history if history is not working

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3030 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRe-think semantics of COMPUTE_INFO
jpritikin [Tue, 31 Dec 2013 00:21:11 +0000 (00:21 +0000)]
Re-think semantics of COMPUTE_INFO

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3029 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPartially fix sandwich
jpritikin [Tue, 31 Dec 2013 00:21:06 +0000 (00:21 +0000)]
Partially fix sandwich

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3028 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRework SE reporting
jpritikin [Tue, 31 Dec 2013 00:20:58 +0000 (00:20 +0000)]
Rework SE reporting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3027 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove debug output
jpritikin [Tue, 31 Dec 2013 00:20:50 +0000 (00:20 +0000)]
Improve debug output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3026 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix iteration counter
jpritikin [Tue, 31 Dec 2013 00:20:44 +0000 (00:20 +0000)]
Fix iteration counter

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3025 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Move some result reporting to glue"
jpritikin [Mon, 30 Dec 2013 22:42:37 +0000 (22:42 +0000)]
Revert "Move some result reporting to glue"

I think this needs to be done at some point, but I don't have time to
untangle it at the moment.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3024 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove some result reporting to glue
jpritikin [Mon, 30 Dec 2013 01:58:01 +0000 (01:58 +0000)]
Move some result reporting to glue

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3023 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRestore original omxRecompute semantics
jpritikin [Mon, 23 Dec 2013 21:36:21 +0000 (21:36 +0000)]
Restore original omxRecompute semantics

However, it is necessary to change import/export to call a separate
recompute-ish API to avoid useless fit function computations. Most
likely, a better name could be devised than mxInitialCompute.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3022 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoControl some ComputeEstimatedHessian knobs from R
jpritikin [Mon, 23 Dec 2013 21:36:15 +0000 (21:36 +0000)]
Control some ComputeEstimatedHessian knobs from R

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3021 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDo not use roxygen to create Collate field
jpritikin [Fri, 20 Dec 2013 00:32:20 +0000 (00:32 +0000)]
Do not use roxygen to create Collate field

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3020 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove latent distribution gradients
jpritikin [Tue, 17 Dec 2013 18:50:30 +0000 (18:50 +0000)]
Remove latent distribution gradients

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3019 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMaybe sandwich working
jpritikin [Tue, 17 Dec 2013 18:50:24 +0000 (18:50 +0000)]
Maybe sandwich working

After looking at Yuan, Cheng, & Patton (2013), it seems unlikely that
latent distribution gradients are of much utility. At the previous
commit, they are working and validated against numDeriv. I will remove
them in the next commit.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3018 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoOptimize latent distribution gradients 3/3
jpritikin [Tue, 17 Dec 2013 18:50:18 +0000 (18:50 +0000)]
Optimize latent distribution gradients 3/3

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3017 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoOptimize latent distribution gradients 2/3
jpritikin [Tue, 17 Dec 2013 18:50:14 +0000 (18:50 +0000)]
Optimize latent distribution gradients 2/3

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3016 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoOptimize latent distribution gradients 1/3
jpritikin [Tue, 17 Dec 2013 18:50:11 +0000 (18:50 +0000)]
Optimize latent distribution gradients 1/3

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3015 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoLatent distribution parameters, gradient and information
jpritikin [Tue, 17 Dec 2013 18:50:06 +0000 (18:50 +0000)]
Latent distribution parameters, gradient and information

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3014 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1