openmx:openmx.git
4 years agoRemove unimplemented and crashing omxSetFinalReturnsFIMLFitFunction
jpritikin [Thu, 15 May 2014 09:04:23 +0000 (09:04 +0000)]
Remove unimplemented and crashing omxSetFinalReturnsFIMLFitFunction

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3452 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRepairs some uninitialized memory reads introduced with rowSkip
jpritikin [Thu, 15 May 2014 09:04:14 +0000 (09:04 +0000)]
Repairs some uninitialized memory reads introduced with rowSkip

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3451 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoChanges to mxStandardizeRAMpaths() so that it works correctly when there are submodel...
rkirkpatrick [Tue, 13 May 2014 21:08:03 +0000 (21:08 +0000)]
Changes to mxStandardizeRAMpaths() so that it works correctly when there are submodels with independent=T.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3450 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdded a warning about using "one" as a label in mxPaths.
tbates [Tue, 13 May 2014 09:25:36 +0000 (09:25 +0000)]
Added a warning about using "one" as a label in mxPaths.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3449 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCheaper version of the previous change
jpritikin [Mon, 12 May 2014 06:13:31 +0000 (06:13 +0000)]
Cheaper version of the previous change

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3448 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRecompute fit after NPSOL is done (necessary!)
jpritikin [Mon, 12 May 2014 05:09:19 +0000 (05:09 +0000)]
Recompute fit after NPSOL is done (necessary!)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3447 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd failing test for CSOLNP
jpritikin [Sun, 11 May 2014 04:47:04 +0000 (04:47 +0000)]
Add failing test for CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3446 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agominor error msg mod to suggest action if non-square matrix declared as cov: perhaps...
tbates [Sat, 10 May 2014 15:27:12 +0000 (15:27 +0000)]
minor error msg mod to suggest action if non-square matrix declared as cov: perhaps you meant type = 'raw' instead of 'cov'?

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3445 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCorrectly capitalize OpenMx in the summary output
jpritikin [Sat, 10 May 2014 13:06:00 +0000 (13:06 +0000)]
Correctly capitalize OpenMx in the summary output

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3444 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoWarn if summary is called on a model that was modified after mxRun
jpritikin [Sat, 10 May 2014 13:05:51 +0000 (13:05 +0000)]
Warn if summary is called on a model that was modified after mxRun

This changeset probably does not catch all places that a model
can be modified. However, this is a glaring user interface
change that needs wider testing.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3443 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix typo
jpritikin [Sat, 10 May 2014 03:41:45 +0000 (03:41 +0000)]
Fix typo

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3442 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoChanges to mxStandardizeRAMpaths()'s documentation as discussed at today's meeting.
rkirkpatrick [Fri, 9 May 2014 19:01:23 +0000 (19:01 +0000)]
Changes to mxStandardizeRAMpaths()'s documentation as discussed at today's meeting.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3441 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDocument plan for summary decided during the May 09 meeting
jpritikin [Fri, 9 May 2014 15:00:11 +0000 (15:00 +0000)]
Document plan for summary decided during the May 09 meeting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3440 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove old standardization deadcode
jpritikin [Fri, 9 May 2014 01:30:17 +0000 (01:30 +0000)]
Remove old standardization deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3439 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd test script for mxStandardizeRAMpaths().
rkirkpatrick [Thu, 8 May 2014 17:55:06 +0000 (17:55 +0000)]
Add test script for mxStandardizeRAMpaths().

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3438 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTweaked mxStandardizeRAMpaths()'s code to throw an error when no submodels use RAM...
rkirkpatrick [Thu, 8 May 2014 17:54:17 +0000 (17:54 +0000)]
Tweaked mxStandardizeRAMpaths()'s code to throw an error when no submodels use RAM expectation; disable standardized results from appearing in summary() output.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3437 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd test for "Fix mxRename with constraints bug"
jpritikin [Thu, 8 May 2014 11:14:43 +0000 (11:14 +0000)]
Add test for "Fix mxRename with constraints bug"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3436 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoShow symbolic name for fitfunction in default compute plan
jpritikin [Thu, 8 May 2014 11:08:32 +0000 (11:08 +0000)]
Show symbolic name for fitfunction in default compute plan

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3435 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd test for handling of backend resized 1x1 matrices
jpritikin [Thu, 8 May 2014 08:08:10 +0000 (08:08 +0000)]
Add test for handling of backend resized 1x1 matrices

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3434 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd note about a better way to fix this problem
jpritikin [Thu, 8 May 2014 08:08:01 +0000 (08:08 +0000)]
Add note about a better way to fix this problem

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3433 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoBug Fix: the backend resized 1x1 matrices to MxN when used in scalar/elementwise...
mhunter [Thu, 8 May 2014 05:55:17 +0000 (05:55 +0000)]
Bug Fix: the backend resized 1x1 matrices to MxN when used in scalar/elementwise multiplication, but then did not resize them back in the frontend. Now the updateModelMatrices etc functions are smarter about this.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3432 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix mxRename with constraints bug.
mhunter [Wed, 7 May 2014 21:39:15 +0000 (21:39 +0000)]
Fix mxRename with constraints bug.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3431 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoLearn mxMatrix dimnames from values if explicit dimnames omitted
jpritikin [Wed, 7 May 2014 12:24:04 +0000 (12:24 +0000)]
Learn mxMatrix dimnames from values if explicit dimnames omitted

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3430 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd sanity check for minItemsPerScore
jpritikin [Wed, 7 May 2014 12:23:49 +0000 (12:23 +0000)]
Add sanity check for minItemsPerScore

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3429 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPotential bug fix in MxSummary to fix issue 'summary() of fitted mxModel object retur...
mhunter [Wed, 7 May 2014 06:06:01 +0000 (06:06 +0000)]
Potential bug fix in MxSummary to fix issue 'summary() of fitted mxModel object returns error'

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3428 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDon't let the filtered ihess leak into SE calculations
jpritikin [Wed, 7 May 2014 04:49:45 +0000 (04:49 +0000)]
Don't let the filtered ihess leak into SE calculations

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3427 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoClean up warnings from User's Guild (docs).
mhunter [Wed, 7 May 2014 01:24:51 +0000 (01:24 +0000)]
Clean up warnings from User's Guild (docs).

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3426 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoConfidence Intervals now give the name of the parameter if they are from an MxMatrix...
mhunter [Tue, 6 May 2014 21:52:18 +0000 (21:52 +0000)]
Confidence Intervals now give the name of the parameter if they are from an MxMatrix instead of the MatrixName[row,col].  Confidence intervals on algebras still give AlgebraName[row,col].

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3425 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCode and man page for new user-visible function that standardizes path coefficients...
rkirkpatrick [Tue, 6 May 2014 17:18:07 +0000 (17:18 +0000)]
Code and man page for new user-visible function that standardizes path coefficients in RAM models.  Also removed the '@' accessor from a script in models/failing.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3424 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoBetter protect BA81 from parallel execution
jpritikin [Mon, 5 May 2014 11:54:08 +0000 (11:54 +0000)]
Better protect BA81 from parallel execution

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3423 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoExterminate strncmp
jpritikin [Mon, 5 May 2014 11:53:55 +0000 (11:53 +0000)]
Exterminate strncmp

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3422 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImplement naAction and minItemsPerScore options
jpritikin [Mon, 5 May 2014 11:53:44 +0000 (11:53 +0000)]
Implement naAction and minItemsPerScore options

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3421 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove numUnique, was redundent
jpritikin [Mon, 5 May 2014 11:53:32 +0000 (11:53 +0000)]
Remove numUnique, was redundent

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3420 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSet up BA81 internals for row weights
jpritikin [Mon, 5 May 2014 11:53:24 +0000 (11:53 +0000)]
Set up BA81 internals for row weights

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3419 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDistinguish between sorted/unsorted and whether sorting is requested
jpritikin [Mon, 5 May 2014 11:53:12 +0000 (11:53 +0000)]
Distinguish between sorted/unsorted and whether sorting is requested

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3418 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unneeded parameter from isErrorRaised()
jpritikin [Mon, 5 May 2014 06:14:27 +0000 (06:14 +0000)]
Remove unneeded parameter from isErrorRaised()

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3417 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPrevent additions of 'strncmp'
jpritikin [Mon, 5 May 2014 06:14:17 +0000 (06:14 +0000)]
Prevent additions of 'strncmp'

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3416 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFixed Saturated Likelihood Bug by not populating that attribute for FIML.
mhunter [Sun, 4 May 2014 23:20:41 +0000 (23:20 +0000)]
Fixed Saturated Likelihood Bug by not populating that attribute for FIML.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3415 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSupport NPSOL warmStart
jpritikin [Sun, 4 May 2014 05:54:01 +0000 (05:54 +0000)]
Support NPSOL warmStart

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3414 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd option to checkpoint every evaluation
jpritikin [Sun, 4 May 2014 04:39:14 +0000 (04:39 +0000)]
Add option to checkpoint every evaluation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3413 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Add option to checkpoint every evaluation"
jpritikin [Sun, 4 May 2014 04:38:55 +0000 (04:38 +0000)]
Revert "Add option to checkpoint every evaluation"

Sorry, I checked in the wrong version of this patch. It's mostly broken.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3412 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd option to checkpoint every evaluation
jpritikin [Sat, 3 May 2014 12:48:23 +0000 (12:48 +0000)]
Add option to checkpoint every evaluation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3411 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRewrite MxCompute pretty-printing code
jpritikin [Sat, 3 May 2014 09:31:13 +0000 (09:31 +0000)]
Rewrite MxCompute pretty-printing code

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3410 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTake abs(ev) when inverting Hessian (suggested by Timo von Oertzen)
jpritikin [Sat, 3 May 2014 09:31:05 +0000 (09:31 +0000)]
Take abs(ev) when inverting Hessian (suggested by Timo von Oertzen)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3409 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMatch item and data column names
jpritikin [Sat, 3 May 2014 09:30:55 +0000 (09:30 +0000)]
Match item and data column names

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3408 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoTidy previous commit
jpritikin [Sat, 3 May 2014 02:55:40 +0000 (02:55 +0000)]
Tidy previous commit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3407 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoBug fix the number of observed statistics in non-IFA models with raw data. This...
mhunter [Fri, 2 May 2014 19:59:35 +0000 (19:59 +0000)]
Bug fix the number of observed statistics in non-IFA models with raw data.  This may break Obs Stats in IFA models.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3406 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix typo in preview commit
jpritikin [Fri, 2 May 2014 13:36:35 +0000 (13:36 +0000)]
Fix typo in preview commit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3405 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSparse invert, handle the non-overlapping case
jpritikin [Fri, 2 May 2014 13:03:31 +0000 (13:03 +0000)]
Sparse invert, handle the non-overlapping case

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3404 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoIn addition to the mxOption, let mxData(sort=FALSE) request unsorted data
jpritikin [Fri, 2 May 2014 13:03:11 +0000 (13:03 +0000)]
In addition to the mxOption, let mxData(sort=FALSE) request unsorted data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3403 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd a git bisect script
jpritikin [Fri, 2 May 2014 07:57:08 +0000 (07:57 +0000)]
Add a git bisect script

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3402 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoShow optimizer engine
jpritikin [Fri, 2 May 2014 07:52:25 +0000 (07:52 +0000)]
Show optimizer engine

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3401 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Fix Observed Statistics regression"
jpritikin [Fri, 2 May 2014 06:49:49 +0000 (06:49 +0000)]
Revert "Fix Observed Statistics regression"

This is the problem but requires a few more fixes.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3400 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix Observed Statistics regression
jpritikin [Fri, 2 May 2014 06:43:59 +0000 (06:43 +0000)]
Fix Observed Statistics regression

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3399 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoShow MxCompute plan in summary
jpritikin [Fri, 2 May 2014 06:43:52 +0000 (06:43 +0000)]
Show MxCompute plan in summary

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3398 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove doc for mxCI
jpritikin [Fri, 2 May 2014 01:44:56 +0000 (01:44 +0000)]
Improve doc for mxCI

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3397 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDrop omxPresortData idea
jpritikin [Thu, 1 May 2014 14:29:54 +0000 (14:29 +0000)]
Drop omxPresortData idea

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3396 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCheckpoint correct fit in Newton-Raphson
jpritikin [Thu, 1 May 2014 06:58:13 +0000 (06:58 +0000)]
Checkpoint correct fit in Newton-Raphson

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3395 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove test to passing
jpritikin [Wed, 30 Apr 2014 02:57:25 +0000 (02:57 +0000)]
Move test to passing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3394 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: Problem with simplestCI.R solved
mzahery [Tue, 29 Apr 2014 15:14:46 +0000 (15:14 +0000)]
CSOLNP: Problem with simplestCI.R solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3393 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFixed bug where mxOption 'Default optimizer', and other options as well, get overwrit...
jpritikin [Tue, 29 Apr 2014 09:07:57 +0000 (09:07 +0000)]
Fixed bug where mxOption 'Default optimizer', and other options as well, get overwritten to the global defaults despite the user having set them to be different from global defaults in the model being run.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3392 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFix bug in "mxOption without a value to show the current setting"
jpritikin [Tue, 29 Apr 2014 09:07:50 +0000 (09:07 +0000)]
Fix bug in "mxOption without a value to show the current setting"

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3391 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert "Fixed bug where mxOption 'Default optimizer', and other options as well,...
jpritikin [Tue, 29 Apr 2014 08:34:43 +0000 (08:34 +0000)]
Revert "Fixed bug where mxOption 'Default optimizer', and other options as well, get overwritten to the global defaults despite the user having set them to be different from global defaults in the model being run."

This "fix" breaks the test suite. Can you try again and add some tests
to ensure that you obtain the desired behavior?

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3390 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoFixed bug where mxOption 'Default optimizer', and other options as well, get overwrit...
rkirkpatrick [Mon, 28 Apr 2014 16:54:18 +0000 (16:54 +0000)]
Fixed bug where mxOption 'Default optimizer', and other options as well, get overwritten to the global defaults despite the user having set them to be different from global defaults in the model being run.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3389 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agologLik for mxModel (contributed by Andreas Brandmaier)
jpritikin [Mon, 28 Apr 2014 12:10:33 +0000 (12:10 +0000)]
logLik for mxModel (contributed by Andreas Brandmaier)

See http://openmx.psyc.virginia.edu/thread/931

This should probably be better integrated with mxSummary, but I'm adding
it now just to get a rough draft checked in.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3388 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoIgnore non-convergence in ComputeEM M-step
jpritikin [Mon, 28 Apr 2014 12:10:24 +0000 (12:10 +0000)]
Ignore non-convergence in ComputeEM M-step

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3387 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agomxOption without a value to show the current setting
jpritikin [Mon, 28 Apr 2014 12:10:17 +0000 (12:10 +0000)]
mxOption without a value to show the current setting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3386 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoForce a positive semidefinite covariance matrix
jpritikin [Mon, 28 Apr 2014 12:10:06 +0000 (12:10 +0000)]
Force a positive semidefinite covariance matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3385 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoImprove diagnostics
jpritikin [Mon, 28 Apr 2014 12:09:58 +0000 (12:09 +0000)]
Improve diagnostics

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3384 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoomxPresortData
jpritikin [Mon, 28 Apr 2014 12:09:49 +0000 (12:09 +0000)]
omxPresortData

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3383 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMove omxData to a C++ object
jpritikin [Mon, 28 Apr 2014 12:09:40 +0000 (12:09 +0000)]
Move omxData to a C++ object

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3382 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDemand dimnames for the prior distribution
jpritikin [Mon, 28 Apr 2014 12:09:31 +0000 (12:09 +0000)]
Demand dimnames for the prior distribution

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3381 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCoax summary to work with dynamic data
jpritikin [Mon, 28 Apr 2014 12:09:08 +0000 (12:09 +0000)]
Coax summary to work with dynamic data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3380 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDelete unused variable
jpritikin [Mon, 28 Apr 2014 12:08:53 +0000 (12:08 +0000)]
Delete unused variable

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3379 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd failing one-sided CI test
jpritikin [Mon, 28 Apr 2014 10:37:36 +0000 (10:37 +0000)]
Add failing one-sided CI test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3378 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoInline omxPopulateConfidenceIntervals
jpritikin [Mon, 28 Apr 2014 10:37:24 +0000 (10:37 +0000)]
Inline omxPopulateConfidenceIntervals

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3377 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoPlace likelihood-based CI code into a separate MxCompute step
jpritikin [Mon, 28 Apr 2014 10:37:16 +0000 (10:37 +0000)]
Place likelihood-based CI code into a separate MxCompute step

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3376 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd test for fitting a latent distribution with fixed item parameters
jpritikin [Mon, 28 Apr 2014 10:37:03 +0000 (10:37 +0000)]
Add test for fitting a latent distribution with fixed item parameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3375 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdjust log levels
jpritikin [Mon, 28 Apr 2014 10:36:54 +0000 (10:36 +0000)]
Adjust log levels

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3374 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd rownames to standardErrors
jpritikin [Mon, 28 Apr 2014 10:36:46 +0000 (10:36 +0000)]
Add rownames to standardErrors

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3373 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoMoved test to failing, as it fails under the most recent revision.
rkirkpatrick [Thu, 24 Apr 2014 13:38:16 +0000 (13:38 +0000)]
Moved test to failing, as it fails under the most recent revision.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3372 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdded man page for mxThreshold and one factor demo
restabrook [Thu, 24 Apr 2014 03:59:48 +0000 (03:59 +0000)]
Added man page for mxThreshold and one factor demo

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3371 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdded man page for mxThreshold and one factor demo
restabrook [Thu, 24 Apr 2014 03:58:49 +0000 (03:58 +0000)]
Added man page for mxThreshold and one factor demo

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3370 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAs discussed at last week's meeting, added a test to models/passing to check that...
rkirkpatrick [Wed, 23 Apr 2014 17:09:25 +0000 (17:09 +0000)]
As discussed at last week's meeting, added a test to models/passing to check that both NPSOL and CSOLNP throw Code Red when indeed they both should.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3369 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoDo not resetDataSortingFlags
jpritikin [Mon, 21 Apr 2014 19:55:42 +0000 (19:55 +0000)]
Do not resetDataSortingFlags

I hope this change will not break backward compatibility. If the data is
sorted, why do we need to mark it unsorted after mxRun? Sorting it again
should obtain the same result as not sorting it again.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3368 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove deadcode from failed experiment
jpritikin [Mon, 21 Apr 2014 19:55:41 +0000 (19:55 +0000)]
Remove deadcode from failed experiment

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3367 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: taking care of general warnings
mzahery [Mon, 21 Apr 2014 19:10:58 +0000 (19:10 +0000)]
CSOLNP: taking care of general warnings

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3366 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCSOLNP: warnings about convergence solved
mzahery [Mon, 21 Apr 2014 03:21:31 +0000 (03:21 +0000)]
CSOLNP: warnings about convergence solved

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3365 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoCan omit initial fit computation after the first iteration
jpritikin [Sat, 19 Apr 2014 14:20:17 +0000 (14:20 +0000)]
Can omit initial fit computation after the first iteration

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3364 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdd some args for control of NA behavior
jpritikin [Sat, 19 Apr 2014 14:20:12 +0000 (14:20 +0000)]
Add some args for control of NA behavior

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3363 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRandom number generation changed from R-2.14 vs later versions
jpritikin [Fri, 18 Apr 2014 20:35:04 +0000 (20:35 +0000)]
Random number generation changed from R-2.14 vs later versions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3362 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoSwitch from MASS::mvrnorm to mvtnorm::rmvnorm
jpritikin [Fri, 18 Apr 2014 10:19:52 +0000 (10:19 +0000)]
Switch from MASS::mvrnorm to mvtnorm::rmvnorm

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3361 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused arguments from omxRaiseError, omxRaiseErrorf
jpritikin [Thu, 17 Apr 2014 15:43:03 +0000 (15:43 +0000)]
Remove unused arguments from omxRaiseError, omxRaiseErrorf

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3360 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove unused argument from omxResizeMatrix
jpritikin [Thu, 17 Apr 2014 15:43:01 +0000 (15:43 +0000)]
Remove unused argument from omxResizeMatrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3359 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRemove irrelevant computation from test
jpritikin [Thu, 17 Apr 2014 14:31:20 +0000 (14:31 +0000)]
Remove irrelevant computation from test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3358 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoLet roxygen handle OpenMx.Rd
jpritikin [Wed, 16 Apr 2014 19:35:39 +0000 (19:35 +0000)]
Let roxygen handle OpenMx.Rd

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3357 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoRevert Tim Bates' disasterous manual changes (pls try again)
jpritikin [Wed, 16 Apr 2014 19:32:50 +0000 (19:32 +0000)]
Revert Tim Bates' disasterous manual changes (pls try again)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3356 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEval the fit function before fitting the model
jpritikin [Wed, 16 Apr 2014 19:16:27 +0000 (19:16 +0000)]
Eval the fit function before fitting the model

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3355 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoEnable colored diagnostics for gcc 4.9
jpritikin [Wed, 16 Apr 2014 13:58:37 +0000 (13:58 +0000)]
Enable colored diagnostics for gcc 4.9

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3354 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

4 years agoAdding back manually built help files
tbates [Tue, 15 Apr 2014 15:47:22 +0000 (15:47 +0000)]
Adding back manually built help files

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@3353 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1