openmx:openmx.git
3 years agoRestore parallel processing for CIs
jpritikin [Thu, 18 Dec 2014 18:40:57 +0000 (18:40 +0000)]
Restore parallel processing for CIs

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4117 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd a checkpoint entry for each CI attempt
jpritikin [Thu, 18 Dec 2014 18:40:54 +0000 (18:40 +0000)]
Add a checkpoint entry for each CI attempt

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4116 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd "Checkpoint Fullpath" to override output destination
jpritikin [Thu, 18 Dec 2014 18:40:52 +0000 (18:40 +0000)]
Add "Checkpoint Fullpath" to override output destination

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4115 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMake mxOption(model, val) return the global setting or the model's override
jpritikin [Thu, 18 Dec 2014 18:40:50 +0000 (18:40 +0000)]
Make mxOption(model, val) return the global setting or the model's override

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4114 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMove to failing
jpritikin [Thu, 18 Dec 2014 12:07:18 +0000 (12:07 +0000)]
Move to failing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4113 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd WLS standard error and chi-square functions
mhunter [Thu, 18 Dec 2014 04:29:58 +0000 (04:29 +0000)]
Add WLS standard error and chi-square functions

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4112 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoConsolidate starting value nudging logic in ComputeGD
jpritikin [Thu, 18 Dec 2014 03:51:10 +0000 (03:51 +0000)]
Consolidate starting value nudging logic in ComputeGD

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4111 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTry harder to keep CIs ordered properly vs estimate
jpritikin [Thu, 18 Dec 2014 03:51:07 +0000 (03:51 +0000)]
Try harder to keep CIs ordered properly vs estimate

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4110 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd copyright to Multilevel example
mhunter [Wed, 17 Dec 2014 20:44:42 +0000 (20:44 +0000)]
Add copyright to Multilevel example

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4109 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd check for model identification checking function
mhunter [Wed, 17 Dec 2014 20:44:18 +0000 (20:44 +0000)]
Add check for model identification checking function

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4108 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAnother typo fix in previous commit
mhunter [Wed, 17 Dec 2014 18:57:50 +0000 (18:57 +0000)]
Another typo fix in previous commit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4107 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTypo fix in previous commit
mhunter [Wed, 17 Dec 2014 18:55:57 +0000 (18:55 +0000)]
Typo fix in previous commit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4106 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd partial identification information to ID check. Tells which parameters are not...
mhunter [Wed, 17 Dec 2014 18:51:54 +0000 (18:51 +0000)]
Add partial identification information to ID check.  Tells which parameters are not identified.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4105 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Avoid reuse of obm for more than 1 purpose
jpritikin [Wed, 17 Dec 2014 17:14:55 +0000 (17:14 +0000)]
CSOLNP: Avoid reuse of obm for more than 1 purpose

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4104 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Simplify CI calculation
jpritikin [Wed, 17 Dec 2014 16:00:33 +0000 (16:00 +0000)]
CSOLNP: Simplify CI calculation

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4103 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Tidy optimizer reporting
jpritikin [Wed, 17 Dec 2014 16:00:31 +0000 (16:00 +0000)]
CSOLNP: Tidy optimizer reporting

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4102 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRelax tolerance
jpritikin [Wed, 17 Dec 2014 16:00:28 +0000 (16:00 +0000)]
Relax tolerance

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4101 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Count the number of major iterations
jpritikin [Wed, 17 Dec 2014 02:27:13 +0000 (02:27 +0000)]
CSOLNP: Count the number of major iterations

Not sure if this is exactly right

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4100 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd Makefile rule to run the failing tests
jpritikin [Tue, 16 Dec 2014 22:04:03 +0000 (22:04 +0000)]
Add Makefile rule to run the failing tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4099 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Return stuff via CSOLNPFit; isolate Matrix inside of subnp
jpritikin [Tue, 16 Dec 2014 22:04:00 +0000 (22:04 +0000)]
CSOLNP: Return stuff via CSOLNPFit; isolate Matrix inside of subnp

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4098 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove some redundent information
jpritikin [Tue, 16 Dec 2014 19:38:32 +0000 (19:38 +0000)]
CSOLNP: Remove some redundent information

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4097 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove template argument from CSOLNP::solnp
jpritikin [Tue, 16 Dec 2014 19:38:30 +0000 (19:38 +0000)]
Remove template argument from CSOLNP::solnp

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4096 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoStore equality & inequality results in CSOLNPFit
jpritikin [Tue, 16 Dec 2014 19:38:28 +0000 (19:38 +0000)]
Store equality & inequality results in CSOLNPFit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4095 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoReduce variable lifetime
yang [Tue, 16 Dec 2014 15:29:00 +0000 (15:29 +0000)]
Reduce variable lifetime

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4094 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTidy some minor valgrind issues
jpritikin [Tue, 16 Dec 2014 15:00:30 +0000 (15:00 +0000)]
Tidy some minor valgrind issues

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4093 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove q() from test
jpritikin [Tue, 16 Dec 2014 15:00:29 +0000 (15:00 +0000)]
Remove q() from test

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4092 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMove nightly test to passing
jpritikin [Tue, 16 Dec 2014 11:39:27 +0000 (11:39 +0000)]
Move nightly test to passing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4091 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Convert control param to Eigen vector
jpritikin [Tue, 16 Dec 2014 10:20:28 +0000 (10:20 +0000)]
CSOLNP: Convert control param to Eigen vector

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4090 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Move bounds to CSOLNPFit; remove lots of deadcode
jpritikin [Tue, 16 Dec 2014 01:03:49 +0000 (01:03 +0000)]
CSOLNP: Move bounds to CSOLNPFit; remove lots of deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4089 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Move inequality bounds to CSOLNPFit
jpritikin [Mon, 15 Dec 2014 20:28:05 +0000 (20:28 +0000)]
CSOLNP: Move inequality bounds to CSOLNPFit

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4088 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove Matrix arg from CSOLNPFit::solFun
jpritikin [Mon, 15 Dec 2014 20:28:03 +0000 (20:28 +0000)]
CSOLNP: Remove Matrix arg from CSOLNPFit::solFun

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4087 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove GLOB_ prefix since variables are no longer global
jpritikin [Mon, 15 Dec 2014 17:36:15 +0000 (17:36 +0000)]
CSOLNP: Remove GLOB_ prefix since variables are no longer global

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4086 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Eliminate more globals
jpritikin [Mon, 15 Dec 2014 17:36:13 +0000 (17:36 +0000)]
CSOLNP: Eliminate more globals

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4085 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Continue refactoring API
jpritikin [Mon, 15 Dec 2014 17:36:11 +0000 (17:36 +0000)]
CSOLNP: Continue refactoring API

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4084 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Pass parameter vector using Eigen
jpritikin [Mon, 15 Dec 2014 17:36:10 +0000 (17:36 +0000)]
CSOLNP: Pass parameter vector using Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4083 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Rewrite omxProcessConstraintsCsolnp in Eigen
jpritikin [Mon, 15 Dec 2014 17:36:07 +0000 (17:36 +0000)]
CSOLNP: Rewrite omxProcessConstraintsCsolnp in Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4082 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoDocument constraint types better (in source code)
jpritikin [Mon, 15 Dec 2014 17:36:04 +0000 (17:36 +0000)]
Document constraint types better (in source code)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4081 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Don't bother creating the unused solEqB matrix
jpritikin [Mon, 15 Dec 2014 17:36:03 +0000 (17:36 +0000)]
CSOLNP: Don't bother creating the unused solEqB matrix

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4080 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Eliminate reliance on all-zero solEqB
jpritikin [Mon, 15 Dec 2014 17:36:00 +0000 (17:36 +0000)]
CSOLNP: Eliminate reliance on all-zero solEqB

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4079 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoConstraints bounds are determined by the type
jpritikin [Mon, 15 Dec 2014 17:35:58 +0000 (17:35 +0000)]
Constraints bounds are determined by the type

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4078 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMake it easier to run tests
jpritikin [Mon, 15 Dec 2014 17:35:57 +0000 (17:35 +0000)]
Make it easier to run tests

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4077 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSimplify setup of constraints
jpritikin [Mon, 15 Dec 2014 17:35:55 +0000 (17:35 +0000)]
Simplify setup of constraints

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4076 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Put in temporary fix for conformability of derivs with constraints
jpritikin [Mon, 15 Dec 2014 12:55:28 +0000 (12:55 +0000)]
CSOLNP: Put in temporary fix for conformability of derivs with constraints

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4075 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Fix some problems revealed by Eigen conformability checking
jpritikin [Mon, 15 Dec 2014 03:13:16 +0000 (03:13 +0000)]
CSOLNP: Fix some problems revealed by Eigen conformability checking

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4074 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRework calculation of compiler args; add IMX_SAFE switch
jpritikin [Mon, 15 Dec 2014 02:45:33 +0000 (02:45 +0000)]
Rework calculation of compiler args; add IMX_SAFE switch

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4073 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd test for omxGetParameters
jpritikin [Sat, 13 Dec 2014 21:52:57 +0000 (21:52 +0000)]
Add test for omxGetParameters

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4072 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSwitch default optimizer back to CSOLNP
jpritikin [Sat, 13 Dec 2014 19:21:00 +0000 (19:21 +0000)]
Switch default optimizer back to CSOLNP

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4071 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoomxGetParameters: Omit duplicated parameters even when there are no submodels
jpritikin [Sat, 13 Dec 2014 19:18:43 +0000 (19:18 +0000)]
omxGetParameters: Omit duplicated parameters even when there are no submodels

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4070 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoTidy up MxMatrix-related error and warning messages; re-write MatrixErrorDetection...
rkirkpatrick [Fri, 12 Dec 2014 16:40:47 +0000 (16:40 +0000)]
Tidy up MxMatrix-related error and warning messages; re-write MatrixErrorDetection.R to be much more thorough.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4069 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoBA81: Need to fail hard
jpritikin [Thu, 11 Dec 2014 14:28:24 +0000 (14:28 +0000)]
BA81: Need to fail hard

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4068 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoBA81: Prohibit all NA rows
jpritikin [Wed, 10 Dec 2014 20:21:04 +0000 (20:21 +0000)]
BA81: Prohibit all NA rows

All NA rows screw up latent distribution estimates.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4067 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSmall but important MxMatrix-related adjustments.
rkirkpatrick [Wed, 10 Dec 2014 19:11:05 +0000 (19:11 +0000)]
Small but important MxMatrix-related adjustments.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4066 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd Jacobian-based model identification check.
mhunter [Sun, 7 Dec 2014 14:29:50 +0000 (14:29 +0000)]
Add Jacobian-based model identification check.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4065 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdded method for getting cov, means, and thresh from LISREL expectation.
mhunter [Sat, 6 Dec 2014 17:36:55 +0000 (17:36 +0000)]
Added method for getting cov, means, and thresh from LISREL expectation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4064 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdded method for getting cov, means, and thresh from RAM expectation.
mhunter [Sat, 6 Dec 2014 15:52:55 +0000 (15:52 +0000)]
Added method for getting cov, means, and thresh from RAM expectation.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4063 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdded generic for getting expected covariance, means, and thresholds.
mhunter [Sat, 6 Dec 2014 15:52:13 +0000 (15:52 +0000)]
Added generic for getting expected covariance, means, and thresholds.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4062 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoSmall test for LISREL type, to be expanded as LISREL functionality expands.
mhunter [Fri, 5 Dec 2014 20:55:29 +0000 (20:55 +0000)]
Small test for LISREL type, to be expanded as LISREL functionality expands.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4061 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoLISREL model initialization.
mhunter [Fri, 5 Dec 2014 20:54:26 +0000 (20:54 +0000)]
LISREL model initialization.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4060 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoBetter MxMatrix verification to catch at runtime a lot of user blunders involving...
rkirkpatrick [Fri, 5 Dec 2014 18:46:29 +0000 (18:46 +0000)]
Better MxMatrix verification to catch at runtime a lot of user blunders involving condenseSlots and @ <- .

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4059 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoConditionally "condense" the 'labels', 'free', 'lbound', and 'ubound' slots of MxMatr...
rkirkpatrick [Fri, 5 Dec 2014 16:58:27 +0000 (16:58 +0000)]
Conditionally "condense" the 'labels', 'free', 'lbound', and 'ubound' slots of MxMatrix objects.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4058 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Convert ind to Eigen; make easier to understand
jpritikin [Fri, 5 Dec 2014 16:44:49 +0000 (16:44 +0000)]
CSOLNP: Convert ind to Eigen; make easier to understand

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4057 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEnable ubsan for gcc 4.9+
jpritikin [Fri, 5 Dec 2014 16:37:38 +0000 (16:37 +0000)]
Enable ubsan for gcc 4.9+

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4056 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMake gcc happier
jpritikin [Fri, 5 Dec 2014 16:37:38 +0000 (16:37 +0000)]
Make gcc happier

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4055 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove more deadcode
jpritikin [Fri, 5 Dec 2014 15:46:43 +0000 (15:46 +0000)]
CSOLNP: Remove more deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4054 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAvoid reuse of condif[123]
jpritikin [Fri, 5 Dec 2014 15:34:49 +0000 (15:34 +0000)]
Avoid reuse of condif[123]

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4053 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agotest if OpenMx disorders thresholds
tbates [Fri, 5 Dec 2014 14:53:14 +0000 (14:53 +0000)]
test if OpenMx disorders thresholds

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4052 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove bounds check; all Eigen ops are already bounds checked
jpritikin [Fri, 5 Dec 2014 14:27:26 +0000 (14:27 +0000)]
CSOLNP: Remove bounds check; all Eigen ops are already bounds checked

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4051 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove superfluous assignment
jpritikin [Fri, 5 Dec 2014 14:25:33 +0000 (14:25 +0000)]
CSOLNP: Remove superfluous assignment

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4050 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Remove deadcode
jpritikin [Fri, 5 Dec 2014 14:21:45 +0000 (14:21 +0000)]
CSOLNP: Remove deadcode

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4049 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Converting function add to Eigen
mzahery [Fri, 5 Dec 2014 03:57:28 +0000 (03:57 +0000)]
CSOLNP: Converting function add to Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4048 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Converting functions subtract and timess to Eigen
mzahery [Fri, 5 Dec 2014 00:46:05 +0000 (00:46 +0000)]
CSOLNP: Converting functions subtract and timess to Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4047 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Converting functions subset, copy, multiply, and divide to Eigen
mzahery [Fri, 5 Dec 2014 00:36:49 +0000 (00:36 +0000)]
CSOLNP: Converting functions subset, copy, multiply, and divide to Eigen

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4046 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: reapplying revisions 3976-3996
mzahery [Fri, 5 Dec 2014 00:26:36 +0000 (00:26 +0000)]
CSOLNP: reapplying revisions 3976-3996

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4045 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd gcc 4.9 support (same binary as gcc 4.8)
jpritikin [Thu, 4 Dec 2014 20:30:01 +0000 (20:30 +0000)]
Add gcc 4.9 support (same binary as gcc 4.8)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4044 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd to summary check
mhunter [Thu, 4 Dec 2014 17:20:49 +0000 (17:20 +0000)]
Add to summary check

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4043 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoWLS maybe working for joint.
mhunter [Wed, 3 Dec 2014 19:06:13 +0000 (19:06 +0000)]
WLS maybe working for joint.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4042 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoHelpful error when SaturatedLikelihood is given a list of two.
mhunter [Wed, 3 Dec 2014 19:05:13 +0000 (19:05 +0000)]
Helpful error when SaturatedLikelihood is given a list of two.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4041 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoChange the fake definition variable value for easier indexing
jpritikin [Tue, 2 Dec 2014 19:25:05 +0000 (19:25 +0000)]
Change the fake definition variable value for easier indexing

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4040 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: Simplify global variables moved to a struct
jpritikin [Tue, 2 Dec 2014 17:04:03 +0000 (17:04 +0000)]
CSOLNP: Simplify global variables moved to a struct

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4039 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix incorrect merge
jpritikin [Tue, 2 Dec 2014 16:49:27 +0000 (16:49 +0000)]
Fix incorrect merge

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4038 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoLoad fake data into definition variables for FF_COMPUTE_INITIAL_FIT
jpritikin [Tue, 2 Dec 2014 16:07:19 +0000 (16:07 +0000)]
Load fake data into definition variables for FF_COMPUTE_INITIAL_FIT

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4037 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRework Algebra API
jpritikin [Tue, 2 Dec 2014 16:07:15 +0000 (16:07 +0000)]
Rework Algebra API

Algebra are a composable unit that only understand how to
recompute. It is improper that they should understand all
of the flavors of omxFFCompute.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4036 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMake tests easier to run from the top level dir
jpritikin [Tue, 2 Dec 2014 16:07:02 +0000 (16:07 +0000)]
Make tests easier to run from the top level dir

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4035 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoProhibit mxComputeOnce on raw algebra
jpritikin [Tue, 2 Dec 2014 16:06:58 +0000 (16:06 +0000)]
Prohibit mxComputeOnce on raw algebra

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4034 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: global variables moved to a struct
mzahery [Tue, 2 Dec 2014 14:25:27 +0000 (14:25 +0000)]
CSOLNP: global variables moved to a struct

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4033 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoFix saturated DoF for raw data when only some of the variables are used. Update...
mhunter [Tue, 2 Dec 2014 07:01:22 +0000 (07:01 +0000)]
Fix saturated DoF for raw data when only some of the variables are used.  Update documentation for summary.

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4032 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove warnings from AlternativeApproaches
mhunter [Tue, 2 Dec 2014 00:36:58 +0000 (00:36 +0000)]
Remove warnings from AlternativeApproaches

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4031 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoBug fix for refs models with cov data
mhunter [Tue, 2 Dec 2014 00:35:48 +0000 (00:35 +0000)]
Bug fix for refs models with cov data

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4030 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoCSOLNP: reverted version checked in
mzahery [Tue, 2 Dec 2014 00:34:32 +0000 (00:34 +0000)]
CSOLNP: reverted version checked in

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4029 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRefrain from evaluating MxMatrix in the front-end
jpritikin [Wed, 26 Nov 2014 02:46:30 +0000 (02:46 +0000)]
Refrain from evaluating MxMatrix in the front-end

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4028 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRefactor computation of CFI, TLI, & RMSEA
jpritikin [Wed, 26 Nov 2014 02:46:28 +0000 (02:46 +0000)]
Refactor computation of CFI, TLI, & RMSEA

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4027 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoRemove confusing comments
jpritikin [Wed, 26 Nov 2014 02:46:26 +0000 (02:46 +0000)]
Remove confusing comments

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4026 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoMove demos to nightly
jpritikin [Wed, 26 Nov 2014 02:46:25 +0000 (02:46 +0000)]
Move demos to nightly

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4025 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoPrevent SEGV on ordinal columns with no thresholds
jpritikin [Wed, 26 Nov 2014 02:46:23 +0000 (02:46 +0000)]
Prevent SEGV on ordinal columns with no thresholds

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4024 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEnsure continuous all-NA column is not run through mxFactor
jpritikin [Wed, 26 Nov 2014 02:46:21 +0000 (02:46 +0000)]
Ensure continuous all-NA column is not run through mxFactor

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4023 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoAdd comment about multinomial degrees of freedom
jpritikin [Wed, 26 Nov 2014 02:46:19 +0000 (02:46 +0000)]
Add comment about multinomial degrees of freedom

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4022 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoEnable --force-biarch for Windows fat binaries & remove obsolete rules
jpritikin [Wed, 26 Nov 2014 02:22:24 +0000 (02:22 +0000)]
Enable --force-biarch for Windows fat binaries & remove obsolete rules

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4021 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoupdate to use twinData instead of myTwinData (a duplicate file)
tbates [Sun, 23 Nov 2014 19:37:17 +0000 (19:37 +0000)]
update to use twinData instead of myTwinData (a duplicate file)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4020 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoupdate to use twinData instead of myTwinData (a duplicate file)
tbates [Sun, 23 Nov 2014 19:33:43 +0000 (19:33 +0000)]
update to use twinData instead of myTwinData (a duplicate file)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4019 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1

3 years agoupdate to use twinData instead of myTwinData (a duplicate file)
tbates [Sun, 23 Nov 2014 19:13:02 +0000 (19:13 +0000)]
update to use twinData instead of myTwinData (a duplicate file)

git-svn-id: http://openmx.psyc.virginia.edu/svn/trunk@4018 df83fd30-4cca-4c36-ab9d-e8b5583ccbd1